Search results for the GEO ID: GSE34602  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM851731 | GPL570 |
|
Mino Mock1
|
Mino cell line, 24h Mock treatment
|
cell line: Mino
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851731
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851731/suppl/GSM851731_RK1_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851732 | GPL570 |
|
Mino Mock2
|
Mino cell line, 24h Mock treatment
|
cell line: Mino
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851732
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851732/suppl/GSM851732_RK2_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851733 | GPL570 |
|
Mino GSI1
|
Mino cell line, 24h GSi treatment
|
cell line: Mino
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851733
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851733/suppl/GSM851733_RK3_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851734 | GPL570 |
|
Mino GSI2
|
Mino cell line, 24h GSI treatment
|
cell line: Mino
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851734
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851734/suppl/GSM851734_RK4_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851735 | GPL570 |
|
Rec-1 Mock1
|
Rec-1 cell line, 24h Mock treatment
|
cell line: Rec-1
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851735
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851735/suppl/GSM851735_RK5_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851736 | GPL570 |
|
Rec-1 Mock2
|
Rec-1 cell line, 24h Mock treatment
|
cell line: Rec-1
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851736
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851736/suppl/GSM851736_RK6_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851737 | GPL570 |
|
Rec-1 GSI1
|
Rec-1 cell line, 24h GSi treatment
|
cell line: Rec-1
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851737
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851737/suppl/GSM851737_RK7_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851738 | GPL570 |
|
Rec-1 GSI2
|
Rec-1 cell line, 24h GSI treatment
|
cell line: Rec-1
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851738
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851738/suppl/GSM851738_RK8_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851739 | GPL570 |
|
SP-49 Mock1
|
SP-49 cell line, 24h Mock treatment
|
cell line: SP-49
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851739
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851739/suppl/GSM851739_RK9_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851740 | GPL570 |
|
SP-49 Mock2
|
SP-49 cell line, 24h Mock treatment
|
cell line: SP-49
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851740
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851740/suppl/GSM851740_RK10_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851741 | GPL570 |
|
SP-49 GSI1
|
SP-49 cell line, 24h GSi treatment
|
cell line: SP-49
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851741
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851741/suppl/GSM851741_RK11_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
|
GSM851742 | GPL570 |
|
SP-49 GSI2
|
SP-49 cell line, 24h GSI treatment
|
cell line: SP-49
cell type: Mantle Cell Lymphoma (MCL)
|
|
| Sample_geo_accession | GSM851742
| | Sample_status | Public on Dec 22 2011
| | Sample_submission_date | Dec 21 2011
| | Sample_last_update_date | Dec 22 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | cells were treated either with 1 micromolar of compound E (GSI group) or 0.1% DMSO (Mock group)
| | Sample_growth_protocol_ch1 | cells were grown in RPMI 15%FBS (Mino) or RPMI 10%FBS (Rec-1 and SP-49) for 24 hours at 37C in a humidified incubator (5% CO2)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Allprep
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug of RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned.
| | Sample_data_processing | normalization by RMA , fold-changes by limma in R
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Kridel
| | Sample_contact_email | rkridel@bccrc.ca
| | Sample_contact_institute | BC Cancer Agency
| | Sample_contact_address | 675 W 10th Avenue
| | Sample_contact_city | Vancouver
| | Sample_contact_zip/postal_code | V5Z 1L3
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM851nnn/GSM851742/suppl/GSM851742_RK12_HG-U133_Plus_2_.CEL.gz
| | Sample_series_id | GSE34602
| | Sample_data_row_count | 54675
| | |
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