Search results for the GEO ID: GSE3467  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM77362 | GPL570 |
|
Thyroid_ unaffected_paired with PTC14T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender: male; Age:42
|
sample name in manuscript: N-PTC2
|
| Sample_geo_accession | GSM77362
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77362/suppl/GSM77362.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77363 | GPL570 |
|
Thyroid_papillary carcinoma 14
|
frozen surgical tissue
|
Tissue: tumor; Gender: male; Age:42 Tumor stage: T3NxMx
|
sample name in manuscript: T-PTC2
|
| Sample_geo_accession | GSM77363
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77363/suppl/GSM77363.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77364 | GPL570 |
|
Thyroid_ unaffected_paired with PTC26T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:male; Age:43
|
sample name in manuscript: N-PTC3
|
| Sample_geo_accession | GSM77364
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77364/suppl/GSM77364.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77365 | GPL570 |
|
Thyroid_papillary carcinoma 26
|
frozen surgical tissue
|
Tissue:tumor; Gender: male; Age:43; Tumor stage:T2NxMx
|
sample name in manuscript: T-PTC3
|
| Sample_geo_accession | GSM77365
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77365/suppl/GSM77365.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77366 | GPL570 |
|
Thyroid_ unaffected_paired with PTC50T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:male; Age:33
|
sample name in manuscript: N-PTC4
|
| Sample_geo_accession | GSM77366
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Univ. Penn
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77366/suppl/GSM77366.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77367 | GPL570 |
|
Thyroid_ papillary carcinoma 50
|
frozen surgical tissue
|
Tissue: tumor; Gender:male; Age:33 Tumor stage:T1N0MX
|
sample name in manuscript: T-PTC4
|
| Sample_geo_accession | GSM77367
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Univ. Penn
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77367/suppl/GSM77367.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77368 | GPL570 |
|
Thyroid_ unaffected_paired with PTC69T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:male; Age:56
|
sample name in manuscript: N-PTC6
|
| Sample_geo_accession | GSM77368
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77368/suppl/GSM77368.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77369 | GPL570 |
|
Thyroid_ papillary carcinoma 69
|
frozen surgical tissue
|
Tissue:tumor; Gender:male; Age:56; Tumor stage:T4N0M1
|
sample name in manuscript: T-PTC6
|
| Sample_geo_accession | GSM77369
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77369/suppl/GSM77369.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77370 | GPL570 |
|
Thyroid_ unaffected_paired with PTC71T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:male; Age:36
|
sample name in manuscript: N-PTC7
|
| Sample_geo_accession | GSM77370
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77370/suppl/GSM77370.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77371 | GPL570 |
|
Thyroid_papillary carcinoma 71
|
frozen surgical tissue
|
Tissue:tumor; Gender:male; Age:36; Tumor stage:T4aN1aM1
|
sample name in manuscript: T-PTC7
|
| Sample_geo_accession | GSM77371
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77371/suppl/GSM77371.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77372 | GPL570 |
|
Thyroid_ unaffected_paired with PTC11T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:female; Age:48
|
sample name in manuscript: N-PTC1
|
| Sample_geo_accession | GSM77372
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77372/suppl/GSM77372.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77373 | GPL570 |
|
Thyroid_ papillary carcinoma 11
|
frozen surgical tissue
|
Tissue:tumor; Gender:female; Age:48 Tumor stage:T3N1bMx
|
sample name in manuscript: T-PTC1
|
| Sample_geo_accession | GSM77373
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77373/suppl/GSM77373.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77374 | GPL570 |
|
Thyroid_ unaffected_paired with PTC67T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:female; Age:43
|
sample name in manuscript: N-PTC5
|
| Sample_geo_accession | GSM77374
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77374/suppl/GSM77374.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77375 | GPL570 |
|
Thyroid_papillary carcinoma 67
|
frozen surgical tissue
|
Tissue:tumor; Gender:female; Age:43; Tumor stage:T1N1aMx
|
sample name in manuscript: T-PTC5
|
| Sample_geo_accession | GSM77375
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77375/suppl/GSM77375.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77376 | GPL570 |
|
Thyroid_ unaffected_paired with PTC77T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender:female; Age:65
|
sample name in manuscript: N-PTC8
|
| Sample_geo_accession | GSM77376
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Univ. Penn
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77376/suppl/GSM77376.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77377 | GPL570 |
|
Thyroid_papillary carcinoma 77
|
frozen surgical tissue
|
Tissue:tumor; Gender:female; Age:65 Tumor stage:T2NxMx
|
sample name in manuscript: T-PTC8
|
| Sample_geo_accession | GSM77377
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Univ. Penn
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77377/suppl/GSM77377.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77378 | GPL570 |
|
Thyroid_ unaffected_paired with PTC86T
|
frozen surgical tissue
|
Tissue: normal thyroid; Gender: female; Age:31
|
sample name in manuscript: N-PTC9
|
| Sample_geo_accession | GSM77378
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77378/suppl/GSM77378.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
| | |
|
GSM77379 | GPL570 |
|
Thyroid_papillary carcinoma 86
|
frozen surgical tissue
|
Tissue:tumor; Gender:female; Age:31; Tumor stage:T4aN1bMx
|
sample name in manuscript: T-PTC9
|
| Sample_geo_accession | GSM77379
| | Sample_status | Public on Dec 19 2005
| | Sample_submission_date | Oct 11 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_biomaterial_provider_ch1 | CHTN-Ohio State University
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | standard Trizol reagent procedures
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Robust Multichip Averages
| | Sample_platform_id | GPL570
| | Sample_contact_name | Sandya,,Liyanarachchi
| | Sample_contact_email | sandya.liyanarachchi@osumc.edu
| | Sample_contact_laboratory | Davuluri Lab
| | Sample_contact_department | Human Genetics
| | Sample_contact_institute | OSU
| | Sample_contact_address | Rm 594, 420, W 12th Avenue
| | Sample_contact_city | Columbus
| | Sample_contact_state | OH
| | Sample_contact_zip/postal_code | 43210
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM77nnn/GSM77379/suppl/GSM77379.CEL.gz
| | Sample_series_id | GSE3467
| | Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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