Search results for the GEO ID: GSE34729  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM854160 | GPL1261 |
|
EVI_GFP negative Lin- cells replicate 1
|
Lin- Rosa26rtTA cells untransduced
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854160
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854160/suppl/GSM854160_Evi1_gfp_neg_1.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
| | |
|
GSM854161 | GPL1261 |
|
EVI_GFP negative Lin- cells replicate 2
|
Lin- Rosa26rtTA cells untransduced
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854161
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854161/suppl/GSM854161_Evi1_gfp_neg_2.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
| | |
|
GSM854162 | GPL1261 |
|
EVI_GFP negative Lin- cells replicate 3
|
Lin- Rosa26rtTA cells untransduced
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854162
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854162/suppl/GSM854162_Evi1_gfp_neg_3.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
| | |
|
GSM854163 | GPL1261 |
|
EVI_GFP positive Lin- cells replicate 1
|
Lin- Rosa26rtTA cells transduced with pRRL.TET.EVI1.IRES.EGFP
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854163
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854163/suppl/GSM854163_Evi1_gfp_pos_4.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
| | |
|
GSM854164 | GPL1261 |
|
EVI_GFP positive Lin- cells replicate 2
|
Lin- Rosa26rtTA cells transduced with pRRL.TET.EVI1.IRES.EGFP
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854164
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854164/suppl/GSM854164_Evi1_gfp_pos_5.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
| | |
|
GSM854165 | GPL1261 |
|
EVI_GFP positive Lin- cells replicate 3
|
Lin- Rosa26rtTA cells transduced with pRRL.TET.EVI1.IRES.EGFP
|
background strain: C57BL/6J
cell type: Lin- hematopoietic progenitors
|
Gene expression data from untransduced Lin- hematopoietic progenitors cultured in S3F11 medium
|
| Sample_geo_accession | GSM854165
| | Sample_status | Public on Jan 09 2013
| | Sample_submission_date | Dec 27 2011
| | Sample_last_update_date | Jan 10 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Flow sorted transduced and untransduced Lin- hematopoietic progenitors were pelleted and total RNA extracted with Qiagen Rneasy Micro Kit
| | Sample_growth_protocol_ch1 | S3F11 medium: murine stem cell factor (mSCF) 50 ng/ml, murine interleukin 3 (mIL-3) 20 ng/ml, human FMS like tyrosine kinase 3 ligand (hFlt-3) 50 ng/ml, and human interleukin 11 (hIL-11) 50 ng/ml
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Rneasy Micro Kit followed by linear RNA amplification with GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin GeneChip 3 IVT Express Kit (Affymetrix)
| | Sample_hyb_protocol | 12.5 ug of fragmented and biotin labeled aRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using Affymetrix 3000 7G Scanner
| | Sample_data_processing | CEL files were background corrected, quantile normalized and summarized using the RMA package (Bioconductor). QC was performed with ArrayQualityMetrics (Bioconductor)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Adrian,,Schwarzer
| | Sample_contact_email | schwarzer.adrian@mh-hannover.de
| | Sample_contact_phone | 00495115325143
| | Sample_contact_department | Experimental Hematology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Str. 1
| | Sample_contact_city | Hannover
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854165/suppl/GSM854165_Evi1_gfp_pos_6.CEL.gz
| | Sample_series_id | GSE34729
| | Sample_series_id | GSE39104
| | Sample_data_row_count | 45101
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