Search results for the GEO ID: GSE34732 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM854174 | GPL1261 |
|
11.5 KO limbs rep 1
|
KO embryos in early limb bud phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 11.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 11.5 - 1
0706A-02_M1-11.5.CEL
Gene expression from limbs of Lmx1b KO mice at 11.5
|
Sample_geo_accession | GSM854174
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854174/suppl/GSM854174.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854175 | GPL1261 |
|
11.5 KO limbs rep 2
|
KO embryos in early limb bud phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 11.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 11.5 - 2
0706A-02_M2-11.5.CEL
Gene expression from limbs of Lmx1b KO mice at 11.5
|
Sample_geo_accession | GSM854175
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854175/suppl/GSM854175.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854176 | GPL1261 |
|
11.5 WT limbs rep 1
|
WT embryos in early limb bud phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 11.5 dpc
genotype/variation: Lmx1b +/+
|
Wild Type - 11.5 - 1
0706A-02_C1-11.5.CEL
Gene expression from limbs of normal mice at 11.5
|
Sample_geo_accession | GSM854176
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854176/suppl/GSM854176.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854177 | GPL1261 |
|
11.5 WT limbs rep 2
|
WT embryos in limb bud phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 11.5 dpc
genotype/variation: Lmx1b +/+
|
Wild Type - 11.5 - 2
0706A-02_C2-11.5.CEL
Gene expression from limbs of normal mice at 11.5
|
Sample_geo_accession | GSM854177
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854177/suppl/GSM854177.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854178 | GPL1261 |
|
12.5 KO limbs rep 1
|
KO embryos in handplate phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 12.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 12.5 - 1
071904A_M1-12.5.CEL
Gene expression from limbs of Lmx1b KO mice at 12.5
|
Sample_geo_accession | GSM854178
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854178/suppl/GSM854178.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854179 | GPL1261 |
|
12.5 KO limbs rep 2
|
KO embryos in handplate phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 12.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 12.5 - 2
071904A_M2-12.5.CEL
Gene expression from limbs of Lmx1b KO mice at 12.5
|
Sample_geo_accession | GSM854179
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854179/suppl/GSM854179.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854180 | GPL1261 |
|
12.5 WT limbs rep 1
|
WT embryos in handplate phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 12.5 dpc
genotype/variation: Lmx1b +/+
|
Wild Type - 12.5 - 1
071904A_C1-12.5.CEL
Gene expression from limbs of normal mice at 12.5
|
Sample_geo_accession | GSM854180
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854180/suppl/GSM854180.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854181 | GPL1261 |
|
12.5 WT limbs rep 2
|
WT embryos in handplate phase of development
|
strain: C57BL/6
tissue: Limb bud and girdle
developmental stage: 12.5 dpc
genotype/variation: Lmx1b +/+
|
Wild Type - 12.5 - 2
071904A_C2-12.5.CEL
Gene expression from limbs of normal mice at 12.5
|
Sample_geo_accession | GSM854181
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854181/suppl/GSM854181.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854182 | GPL1261 |
|
13.5 KO limbs rep 1
|
KO embryos in finger separation phase of limb development
|
strain: C57BL/6
tissue: Handplate
developmental stage: 13.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 13.5 - 1
0407A-02_M1-13.5.CEL
Gene expression from limbs of Lmx1b KO mice at 13.5
|
Sample_geo_accession | GSM854182
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854182/suppl/GSM854182.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854183 | GPL1261 |
|
13.5 KO limbs rep 2
|
KO embryos in finger separation phase of limb development
|
strain: C57BL/6
tissue: Handplate
developmental stage: 13.5 dpc
genotype/variation: Lmx1b -/-
|
Lmx1b KO - 13.5 - 2
0407A-02_M2-13.5.CEL
Gene expression from limbs of Lmx1b KO mice at 13.5
|
Sample_geo_accession | GSM854183
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854183/suppl/GSM854183.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854184 | GPL1261 |
|
13.5 WT limbs rep 1
|
WT embryos in finger separation phase of limb development
|
strain: C57BL/6
tissue: Handplate
developmental stage: 13.5 dpc
genotype/variation: Lmx1b +/+
|
Wild Type - 13.5 - 1
0407A-02_C1-13.5.CEL
Gene expression from limbs of normal mice at 13.5
|
Sample_geo_accession | GSM854184
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854184/suppl/GSM854184.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
| |
|
GSM854185 | GPL1261 |
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13.5 WT limbs rep 2
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WT embryos in finger separation phase of limb development
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strain: C57BL/6
tissue: Handplate
developmental stage: 13.5 dpc
genotype/variation: Lmx1b +/+
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Wild Type - 13.5 - 2
0407A-02_C2-13.5.CEL
Gene expression from limbs of normal mice at 13.5
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Sample_geo_accession | GSM854185
| Sample_status | Public on May 22 2012
| Sample_submission_date | Dec 27 2011
| Sample_last_update_date | May 22 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | Limbs were placed in RNA later (Qiagen), shifted to -80c as per manufacturers protocol, and stored until all of the limbs could be processed.
| Sample_growth_protocol_ch1 | Limbs were harvested from embryos at the specified day of development and genotyped.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA for each sample (6 limbs pooled) was extracted using RNA easy (Qiagen).
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Submitted to UCI Genomics for Biotin labeling of cRNA using standard Afffymetrix protocols
| Sample_hyb_protocol | Hypbrization for 16 hrs by UCI Genomics using standard Affymetrix protocols
| Sample_scan_protocol | Completed by UCI Genomics using a scanner controlled by GeneChip Operating Software
| Sample_data_processing | The data was normalized using RMA and analyzed using the Comprehensive R and Bioconductor based web service for microarray data analysis (CARMAweb - Rainer et al., 2006)
| Sample_platform_id | GPL1261
| Sample_contact_name | Kerby,C,Oberg
| Sample_contact_email | koberg@llu.edu
| Sample_contact_phone | 909 558-7212
| Sample_contact_fax | 909 558-0439
| Sample_contact_department | Pathology
| Sample_contact_institute | Loma Linda University
| Sample_contact_address | 24785 Stewart St
| Sample_contact_city | Loma Linda
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 92354
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854185/suppl/GSM854185.CEL.gz
| Sample_series_id | GSE34732
| Sample_data_row_count | 45101
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