Search results for the GEO ID: GSE34771 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM854942 | GPL570 |
|
PCNSL patient 1
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 65 years
karnofsky performance status (kps): 60
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from male patient, 65 years old, KPS 60, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854942
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854942/suppl/GSM854942.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854943 | GPL570 |
|
PCNSL patient 2
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 73 years
karnofsky performance status (kps): 70
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from male patient, 73 years old, KPS 70, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854943
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854943/suppl/GSM854943.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854944 | GPL570 |
|
PCNSL patient 3
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 55 years
karnofsky performance status (kps): 70
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: less than 1 year
|
Tumor tissue from male patient, 55 years old, KPS 70, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854944
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854944/suppl/GSM854944.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854945 | GPL570 |
|
PCNSL patient 4
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 62 years
karnofsky performance status (kps): 100
outcome: dead
survival time: 1-2 years
|
Tumor tissue from male patient, 62 years old, KPS 100.
|
Sample_geo_accession | GSM854945
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854945/suppl/GSM854945.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854946 | GPL570 |
|
PCNSL patient 5
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 71 years
karnofsky performance status (kps): 80
therapy: HD-MTX-containing polychemotherapy
outcome: alive
survival time: more than 3 years
|
Tumor tissue from female patient, 71 years old, KPS 80, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854946
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854946/suppl/GSM854946.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854947 | GPL570 |
|
PCNSL patient 6
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 63 years
karnofsky performance status (kps): 70
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: 1-2 years
|
Tumor tissue from female patient, 63 years old, KPS 70, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854947
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854947/suppl/GSM854947.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854948 | GPL570 |
|
PCNSL patient 7
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 70 years
karnofsky performance status (kps): 70
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from male patient, 70 years old, KPS 70, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854948
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854948/suppl/GSM854948.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854949 | GPL570 |
|
PCNSL patient 8
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 70 years
karnofsky performance status (kps): 100
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from female patient, 70 years old, KPS 100, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854949
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854949/suppl/GSM854949.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854950 | GPL570 |
|
PCNSL patient 9
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 66 years
karnofsky performance status (kps): 60
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from female patient, 66 years old, KPS 60, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854950
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854950/suppl/GSM854950.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854951 | GPL570 |
|
PCNSL patient 10
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 68 years
karnofsky performance status (kps): 100
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: less than 1 year
|
Tumor tissue from male patient, 68 years old, KPS 100, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854951
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854951/suppl/GSM854951.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854952 | GPL570 |
|
PCNSL patient 11
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 69 years
karnofsky performance status (kps): 50
outcome: dead
survival time: more than 3 years
|
Tumor tissue from male patient, 69 years old, KPS 50.
|
Sample_geo_accession | GSM854952
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854952/suppl/GSM854952.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854953 | GPL570 |
|
PCNSL patient 12
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 58 years
karnofsky performance status (kps): 80
therapy: HD-MTX-containing polychemotherapy
outcome: alive
survival time: more than 3 years
|
Tumor tissue from male patient, 58 years old, KPS 80, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854953
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854953/suppl/GSM854953.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854954 | GPL570 |
|
PCNSL patient 13
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 47 years
karnofsky performance status (kps): 70
outcome: dead
survival time: more than 3 years
|
Tumor tissue from male patient, 47 years old, KPS 70.
|
Sample_geo_accession | GSM854954
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854954/suppl/GSM854954.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854955 | GPL570 |
|
PCNSL patient 14
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 68 years
karnofsky performance status (kps): 90
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from female patient, 68 years old, KPS90 , HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854955
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854955/suppl/GSM854955.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854956 | GPL570 |
|
PCNSL patient 15
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 59 years
karnofsky performance status (kps): 70
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: 1-2 years
|
Tumor tissue from female patient, 59 years old, KPS 70, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854956
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854956/suppl/GSM854956.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854957 | GPL570 |
|
PCNSL patient 16
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 74 years
karnofsky performance status (kps): 70
therapy: HD-MTX chemotherapy
outcome: survival
survival time: more than 3 years
|
Tumor tissue from male patient, 74 years old, KPS 70, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854957
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854957/suppl/GSM854957.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854958 | GPL570 |
|
PCNSL patient 17
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 57 years
karnofsky performance status (kps): 90
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from female patient, 57 years old, KPS 90, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854958
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854958/suppl/GSM854958.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854959 | GPL570 |
|
PCNSL patient 18
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 68 years
karnofsky performance status (kps): 60
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from female patient, 68 years old, KPS 60, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854959
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854959/suppl/GSM854959.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854960 | GPL570 |
|
PCNSL patient 19
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 62 years
karnofsky performance status (kps): 100
therapy: HD-MTX-containing polychemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from male patient, 62 years old, KPS 100, HD-MTX containing polychemotherapy treated.
|
Sample_geo_accession | GSM854960
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854960/suppl/GSM854960.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854961 | GPL570 |
|
PCNSL patient 20
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 68 years
karnofsky performance status (kps): 40
therapy: HD-MTX chemotherapy
outcome: survival
survival time: less than 1 year
|
Tumor tissue from female patient, 68 years old, KPS 40, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854961
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854961/suppl/GSM854961.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854962 | GPL570 |
|
PCNSL patient 21
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 57 years
karnofsky performance status (kps): 60
therapy: HD-MTX chemotherapy
outcome: dead
survival time: less than 1 year
|
Tumor tissue from male patient, 57 years old, KPS 60, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854962
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854962/suppl/GSM854962.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854963 | GPL570 |
|
PCNSL patient 22
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 63 years
karnofsky performance status (kps): 50
outcome: survival
survival time: less than 1 year
|
Tumor tissue from male patient, 63 years old, KPS.50
|
Sample_geo_accession | GSM854963
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854963/suppl/GSM854963.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854964 | GPL570 |
|
PCNSL patient 23
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 59 years
karnofsky performance status (kps): 50
therapy: HD-MTX chemotherapy
outcome: dead
survival time: more than 3 years
|
Tumor tissue from female patient, 59 years old, KPS 50, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854964
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854964/suppl/GSM854964.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854965 | GPL570 |
|
PCNSL patient 24
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 64 years
karnofsky performance status (kps): 80
therapy: HD-MTX chemotherapy
outcome: survival
survival time: more than 3 years
|
Tumor tissue from male patient, 64 years old, KPS80, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854965
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854965/suppl/GSM854965.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854966 | GPL570 |
|
PCNSL patient 25
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 63 years
karnofsky performance status (kps): 80
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from male patient, 63 years old, KPS 80, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854966
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854966/suppl/GSM854966.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854967 | GPL570 |
|
PCNSL patient 26
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 76 years
karnofsky performance status (kps): 60
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 1-2 years
|
Tumor tissue from male patient, 76 years old, KPS 60, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854967
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854967/suppl/GSM854967.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854968 | GPL570 |
|
PCNSL patient 27
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 44 years
karnofsky performance status (kps): 50
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from male patient, 44 years old, KPS 50, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854968
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854968/suppl/GSM854968.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854969 | GPL570 |
|
PCNSL patient 28
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 68 years
karnofsky performance status (kps): 50
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 2-3 years
|
Tumor tissue from female patient, 68 years old, KPS 50, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854969
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854969/suppl/GSM854969.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854970 | GPL570 |
|
PCNSL patient 29
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 50 years
karnofsky performance status (kps): 70
therapy: HD-MTX chemotherapy
outcome: alive
survival time: more than 3 years
|
Tumor tissue from male patient, 50 years old, KPS 70, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854970
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854970/suppl/GSM854970.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854971 | GPL570 |
|
PCNSL patient 30
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 71 years
karnofsky performance status (kps): 40
therapy: HD-MTX chemotherapy
outcome: dead
survival time: 1-2 years
|
Tumor tissue from female patient, 71 years old, KPS 40, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854971
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854971/suppl/GSM854971.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854972 | GPL570 |
|
PCNSL patient 31
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 72 years
karnofsky performance status (kps): 70
therapy: HD-MTX chemotherapy
outcome: alive
survival time: more than 3 years
|
Tumor tissue from female patient, 72 years old, KPS 70, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854972
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854972/suppl/GSM854972.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854973 | GPL570 |
|
PCNSL patient 32
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: male
age: 64 years
karnofsky performance status (kps): 70
therapy: HD-MTX chemotherapy
outcome: alive
survival time: more than 3 years
|
Tumor tissue from male patient, 64 years old, KPS 70, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854973
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854973/suppl/GSM854973.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
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GSM854974 | GPL570 |
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PCNSL patient 33
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Human brain tumor tissue from PCNSL patient
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tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 67 years
karnofsky performance status (kps): 50
therapy: HD-MTX chemotherapy
outcome: alive
survival time: 1-2 years
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Tumor tissue from female patient, 67 years old, KPS 50, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854974
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854974/suppl/GSM854974.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
|
GSM854975 | GPL570 |
|
PCNSL patient 34
|
Human brain tumor tissue from PCNSL patient
|
tissue: brain tumor
disease state: primary central nervous system lymphoma (PCNSL)
gender: female
age: 68 years
karnofsky performance status (kps): 60
therapy: HD-MTX chemotherapy
outcome: alive
survival time: less than 1 year
|
Tumor tissue from female patient, 68 years old, KPS 60, HD-MTX chemotherapy treated.
|
Sample_geo_accession | GSM854975
| Sample_status | Public on Nov 06 2012
| Sample_submission_date | Dec 29 2011
| Sample_last_update_date | Nov 06 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Following fragmentation, 1 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Expression arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100. The data were log2-transformed.
| Sample_platform_id | GPL570
| Sample_contact_name | ryuya,,yamanaka
| Sample_contact_email | ryaman@cmt.kpu-m.ac.jp
| Sample_contact_phone | 81-75-212-5429
| Sample_contact_fax | 81-75-212-5423
| Sample_contact_laboratory | Medical Science
| Sample_contact_department | Graduate School for Health Care Science
| Sample_contact_institute | Kyoto Prefectural University of Medicine
| Sample_contact_address | 465 Kajii-cho, Kamigyoku
| Sample_contact_city | Kyoto
| Sample_contact_zip/postal_code | 602-8566
| Sample_contact_country | Japan
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM854nnn/GSM854975/suppl/GSM854975.CEL.gz
| Sample_series_id | GSE34771
| Sample_data_row_count | 54675
| |
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