Search results for the GEO ID: GSE34882  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM856985 | GPL1261 |
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wild_type_OSE
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Ovarian surface epithelia cells from wild type mice
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tissue: ovarian surface epithelia cells
genotype: wild type
age: 3 month
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gene expression data
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| Sample_geo_accession | GSM856985
| | Sample_status | Public on Jun 21 2012
| | Sample_submission_date | Jan 05 2012
| | Sample_last_update_date | Jun 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM856nnn/GSM856985/suppl/GSM856985_WT_OSE.CEL.gz
| | Sample_series_id | GSE34882
| | Sample_data_row_count | 45101
| | |
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GSM856986 | GPL1261 |
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Pten_Kras_OSE
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Ovarian surface epithelia cells from Pten;Kras;Amhr2-Cre mice
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tissue: ovarian surface epithelia cells
genotype: Ptentm1Hwu/ Ptentm1Hwu;Krastm4Tyj/ Krastm4Tyj ; Amhr2-cre (Pten;Kras;A-cre)
age: 3 month
|
gene expression data
|
| Sample_geo_accession | GSM856986
| | Sample_status | Public on Jun 21 2012
| | Sample_submission_date | Jan 05 2012
| | Sample_last_update_date | Jun 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM856nnn/GSM856986/suppl/GSM856986_PK_OSE.CEL.gz
| | Sample_series_id | GSE34882
| | Sample_data_row_count | 45101
| | |
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GSM856987 | GPL1261 |
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P53_Pten_Kras_OSE
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Ovarian surface epithelia cells from P53;Pten;Kras;Amhr2-Cre mice
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tissue: ovarian surface epithelia cells
genotype: Trp53 fl/fl;Ptentm1Hwu/ Ptentm1Hwu;Krastm4Tyj/ Krastm4Tyj ; Amhr2-cre (P53;Pten;Kras;A-cre)
age: 3 month
|
gene expression data
|
| Sample_geo_accession | GSM856987
| | Sample_status | Public on Jun 21 2012
| | Sample_submission_date | Jan 05 2012
| | Sample_last_update_date | Jun 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Animals were treated in accordance with the NIH Guide for the Care and Use of Laboratory Animals, as approved by the Animal Care and Use Committee at Baylor College of Medicine.
| | Sample_growth_protocol_ch1 | Animals were housed under a 16-h light/8-h dark schedule in the Center for Comparative Medicine at Baylor College of Medicine and provided food and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA
| | Sample_hyb_protocol | cRNA were hybridized on GeneChip Mouse Genome 430 2.0 Array using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.
| | Sample_scan_protocol | GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.
| | Sample_data_processing | The data were analyzed using affy package from Bioconductor with RMA method.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Zhilin,,Liu
| | Sample_contact_email | zhilinl@bcm.tmc.edu
| | Sample_contact_phone | 7137986259
| | Sample_contact_laboratory | Dr. JoAnne S. Richards
| | Sample_contact_department | Molecular and Cellular Biology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | One Baylor Plaza
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM856nnn/GSM856987/suppl/GSM856987_P53null_PK_OSE.CEL.gz
| | Sample_series_id | GSE34882
| | Sample_data_row_count | 45101
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