Search results for the GEO ID: GSE34949  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM859439 | GPL1261 |
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HSC_day0, biological rep 1
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HSC
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cell type: primary hepatic stellate cells
strain: C57BL/6
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Gene expression data from early HSC
|
| Sample_geo_accession | GSM859439
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859439/suppl/GSM859439_176_4119_21566_HSC_0_1_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
| | |
|
GSM859440 | GPL1261 |
|
HSC_day0, biological rep 2
|
HSC
|
cell type: primary hepatic stellate cells
strain: C57BL/6
|
Gene expression data from early HSC
|
| Sample_geo_accession | GSM859440
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859440/suppl/GSM859440_176_4119_21567_HSC_0_2_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
| | |
|
GSM859441 | GPL1261 |
|
HSC_day0, biological rep 3
|
HSC
|
cell type: primary hepatic stellate cells
strain: C57BL/6
|
Gene expression data from early HSC
|
| Sample_geo_accession | GSM859441
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859441/suppl/GSM859441_176_4119_21568_HSC_0_3_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
| | |
|
GSM859442 | GPL1261 |
|
HSC_day7, biological rep 1
|
MF_HSC
|
cell type: primary hepatic stellate cells
strain: C57BL/6
|
Gene expression data from myofibroblastic HSC
|
| Sample_geo_accession | GSM859442
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859442/suppl/GSM859442_176_4119_21570_MF_HSC_2_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
| | |
|
GSM859443 | GPL1261 |
|
HSC_day7, biological rep 2
|
MF_HSC
|
cell type: primary hepatic stellate cells
strain: C57BL/6
|
Gene expression data from myofibroblastic HSC
|
| Sample_geo_accession | GSM859443
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859443/suppl/GSM859443_176_4119_21571_MF_HSC_3_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
| | |
|
GSM859444 | GPL1261 |
|
HSC_day7, biological rep 3
|
MF_HSC
|
cell type: primary hepatic stellate cells
strain: C57BL/6
|
Gene expression data from myofibroblastic HSC
|
| Sample_geo_accession | GSM859444
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 09 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Primary hepatic stellate cells were isolated from rodent liver and cultureed in DMEM with 10% fetal bovine serum and antibiotics for 7 days.
| | Sample_growth_protocol_ch1 | Primary hepatic stellate cells were isolated C57BL6 mice, assessed for purity and viability and cultured for 7days.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Agilent 2100 Bioanalyzer G2939A, Agilent Technologies (Santa Clara, CA)
| | Sample_extract_protocol_ch1 | Nanodrop 8 spectrophotometer, Thermo Scientific/NanoDrop (Wilmington, DE)
| | Sample_extract_protocol_ch1 | Combination of Trizol and Rneasy columns extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | MessageAmp Premier RNA Amplification Kit (Part Number 4385821, AM1792, 4383452), Applied Biosystems/Ambion (Austin, TX)
| | Sample_hyb_protocol | Affymetrix GeneChip hybridization Oven 645, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 7G, Affymetrix (Santa Clara, CA)
| | Sample_scan_protocol | Fluidic station: Affymetrix GeneChip Fluidics Station 450, Affymetrx (Santa Clara, CA)
| | Sample_scan_protocol | Sample register: Affymetrix GeneChip Command Console Scan Control 3.0.0.1214, Affymetrix (Santa Clara, CA)
| | Sample_data_processing | Affymetrix Expression Console version 1.1, Affymetrix (Santa Clara, CA), RMA
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Cynthia,,Moylan
| | Sample_contact_email | cynthia.moylan@duke.edu
| | Sample_contact_department | Gastroenterology
| | Sample_contact_institute | Duke University Medical Center
| | Sample_contact_address | 595 LaSalle Street, GSRB1, DUMC 3256
| | Sample_contact_city | Durham
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27710
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859444/suppl/GSM859444_176_4119_21572_MF_HSC_4_Mouse430+2.CEL.gz
| | Sample_series_id | GSE34949
| | Sample_data_row_count | 45037
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