Search results for the GEO ID: GSE34973  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM859656 | GPL1261 |
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OP9M2 biological rep1
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Supportive mesenchymal stem cell line OP9M2
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cell line: OP9M2
cell type: Mesenchymal Stem cells
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Gene expression from OP9M2 Mesenchymal stem cells
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| Sample_geo_accession | GSM859656
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 10 2012
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Stromal cells were irradiated (2000 rad) and plated (25,000 cells/ cm2) on tissue culture treated wells 48 hrs before harvest
| | Sample_growth_protocol_ch1 | OP9M2 Stromal cells were cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 20% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen). BFC012 was cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 10% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified from one 10 cm culture plate cells that were using QIAshredder and RNEasy Mini Kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | CEL files were normalised using RMA method using the affy package from Bioconductor version 2.7
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,,Magnusson
| | Sample_contact_email | mattias.magnusson@med.lu.se
| | Sample_contact_department | MCDB
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles E Young Drive South, 2204
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90092
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859656/suppl/GSM859656_OP9M2_R1.CEL.gz
| | Sample_series_id | GSE34973
| | Sample_series_id | GSE34974
| | Sample_data_row_count | 45101
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GSM859657 | GPL1261 |
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OP9M2 biological rep2
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Supportive mesenchymal stem cell line OP9M2
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cell line: OP9M2
cell type: Mesenchymal Stem cells
|
Gene expression from OP9M2 Mesenchymal stem cells
|
| Sample_geo_accession | GSM859657
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 10 2012
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Stromal cells were irradiated (2000 rad) and plated (25,000 cells/ cm2) on tissue culture treated wells 48 hrs before harvest
| | Sample_growth_protocol_ch1 | OP9M2 Stromal cells were cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 20% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen). BFC012 was cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 10% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified from one 10 cm culture plate cells that were using QIAshredder and RNEasy Mini Kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | CEL files were normalised using RMA method using the affy package from Bioconductor version 2.7
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,,Magnusson
| | Sample_contact_email | mattias.magnusson@med.lu.se
| | Sample_contact_department | MCDB
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles E Young Drive South, 2204
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90092
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859657/suppl/GSM859657_OP9M2_R2.CEL.gz
| | Sample_series_id | GSE34973
| | Sample_series_id | GSE34974
| | Sample_data_row_count | 45101
| | |
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GSM859658 | GPL1261 |
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BFC012 biological rep1
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Non supportive fibroblast line BFC012
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cell line: BFC012
cell type: Fibroblast from fetal liver
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Gene expression from BFC012
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| Sample_geo_accession | GSM859658
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 10 2012
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Stromal cells were irradiated (2000 rad) and plated (25,000 cells/ cm2) on tissue culture treated wells 48 hrs before harvest
| | Sample_growth_protocol_ch1 | OP9M2 Stromal cells were cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 20% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen). BFC012 was cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 10% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified from one 10 cm culture plate cells that were using QIAshredder and RNEasy Mini Kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | CEL files were normalised using RMA method using the affy package from Bioconductor version 2.7
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,,Magnusson
| | Sample_contact_email | mattias.magnusson@med.lu.se
| | Sample_contact_department | MCDB
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles E Young Drive South, 2204
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90092
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859658/suppl/GSM859658_BFC012_R1.CEL.gz
| | Sample_series_id | GSE34973
| | Sample_series_id | GSE34974
| | Sample_data_row_count | 45101
| | |
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GSM859659 | GPL1261 |
|
BFC012 biological rep2
|
Non supportive fibroblast line BFC012
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cell line: BFC012
cell type: Fibroblast from fetal liver
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Gene expression from BFC012
|
| Sample_geo_accession | GSM859659
| | Sample_status | Public on Jan 31 2013
| | Sample_submission_date | Jan 10 2012
| | Sample_last_update_date | Jan 31 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Stromal cells were irradiated (2000 rad) and plated (25,000 cells/ cm2) on tissue culture treated wells 48 hrs before harvest
| | Sample_growth_protocol_ch1 | OP9M2 Stromal cells were cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 20% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen). BFC012 was cultured in stroma media containing α-MEM (GIBCO/Invitrogen), 10% fetal bovine serum (Hyclone) and 1% penicillin/streptomycin (GIBCO/Invitrogen)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA was purified from one 10 cm culture plate cells that were using QIAshredder and RNEasy Mini Kit (QIAGEN).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol
| | Sample_data_processing | CEL files were normalised using RMA method using the affy package from Bioconductor version 2.7
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Mattias,,Magnusson
| | Sample_contact_email | mattias.magnusson@med.lu.se
| | Sample_contact_department | MCDB
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 621 Charles E Young Drive South, 2204
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90092
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM859nnn/GSM859659/suppl/GSM859659_BFC012_R2.CEL.gz
| | Sample_series_id | GSE34973
| | Sample_series_id | GSE34974
| | Sample_data_row_count | 45101
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