Search results for the GEO ID: GSE35006  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM860189 | GPL570 |
|
IPH-926, pair_1, 37°C, date:24.11.2009
|
IPH-926, pair_1, 37°C, date:24.11.2009
|
condition: p53 status off
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 37 C
|
Sample ID: RLT-001, Description: Serie_A, IPH-926, pair_1, 37°C, date:24.11.2009
|
| Sample_geo_accession | GSM860189
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860189/suppl/GSM860189_Christgen2001_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860190 | GPL570 |
|
IPH-926, pair_1, 32°C, date: 24.11.2009
|
IPH-926, pair_1, 32°C, date: 24.11.2009
|
condition: p53 status on
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 32 C
|
Sample ID: RLT-002, Description: Serie_A, IPH-926, pair_1, 32°C, date: 24.11.2009
|
| Sample_geo_accession | GSM860190
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860190/suppl/GSM860190_Christgen2002_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860191 | GPL570 |
|
IPH-926, pair_2, 37°C, date 22.12.2009
|
IPH-926, pair_2, 37°C, date 22.12.2009
|
condition: p53 status off
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 37 C
|
Sample ID: RLT-003, Description: Serie_A, IPH-926, pair_2, 37°C, date 22.12.2009
|
| Sample_geo_accession | GSM860191
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860191/suppl/GSM860191_Christgen2003_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860192 | GPL570 |
|
IPH-926, pair_2, 32°C, date: 22.12.2009
|
IPH-926, pair_2, 32°C, date: 22.12.2009
|
condition: p53 status on
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 32 C
|
Sample ID: RLT-004, Description: Serie_A, IPH-926, pair_2, 32°C, date: 22.12.2009
|
| Sample_geo_accession | GSM860192
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860192/suppl/GSM860192_Christgen2004_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860193 | GPL570 |
|
IPH-926, pair_3, 37°C, date 25.01.2010
|
IPH-926, pair_3, 37°C, date 25.01.2010
|
condition: p53 status off
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 37 C
|
Sample ID: RLT-009, Description: Serie_A, IPH-926, pair_3, 37°C, date 25.01.2010
|
| Sample_geo_accession | GSM860193
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860193/suppl/GSM860193_Christgen2005_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860194 | GPL570 |
|
IPH-926, pair_3, 32°C, date: 25.01.2010
|
IPH-926, pair_3, 32°C, date: 25.01.2010
|
condition: p53 status on
source tissue: human lobular breast cancer
cell line: IPH-926
treatment: 32 C
|
Sample ID: RLT-010, Description: Serie_A, IPH-926, pair_3, 32°C, date: 25.01.2010
|
| Sample_geo_accession | GSM860194
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860194/suppl/GSM860194_Christgen2006_HG-U133_Plus2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860195 | GPL570 |
|
MCF-7, pair_1, 37°C, date: 25.01.2010
|
MCF-7, pair_1, 37°C, date: 25.01.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 37 C
|
Sample ID: RLT-005, Description: Serie_B, MCF-7, pair_1, 37°C, date: 25.01.2010
|
| Sample_geo_accession | GSM860195
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860195/suppl/GSM860195_Christgen2007_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860196 | GPL570 |
|
MCF-7, pair_1, 32°C, date: 25.01.2010
|
MCF-7, pair_1, 32°C, date: 25.01.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 32 C
|
Sample ID: RLT-006, Description: Serie_B, MCF-7, pair_1, 32°C, date: 25.01.2010
|
| Sample_geo_accession | GSM860196
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860196/suppl/GSM860196_Christgen2008_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860197 | GPL570 |
|
MCF-7, pair_2, 37°C. date: 01.02.2010
|
MCF-7, pair_2, 37°C. date: 01.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 37 C
|
Sample ID: RLT-011, Description: Serie_B, MCF-7, pair_2, 37°C. date: 01.02.2010
|
| Sample_geo_accession | GSM860197
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860197/suppl/GSM860197_Christgen2009_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860198 | GPL570 |
|
MCF-7, pair_2, 32°C, date: 01.02.2010
|
MCF-7, pair_2, 32°C, date: 01.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 32 C
|
Sample ID: RLT-012, Description: Serie_B, MCF-7, pair_2, 32°C, date: 01.02.2010
|
| Sample_geo_accession | GSM860198
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860198/suppl/GSM860198_Christgen20010_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860199 | GPL570 |
|
MCF-7, pair_3, 37°C, date: 08.02.2010
|
MCF-7, pair_3, 37°C, date: 08.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 37 C
|
Sample ID: RLT-015, Description: Serie_B, MCF-7, pair_3, 37°C, date: 08.02.2010
|
| Sample_geo_accession | GSM860199
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860199/suppl/GSM860199_Christgen20011_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860200 | GPL570 |
|
MCF-7, pair_3, 32°C, date: 08.02.2010
|
MCF-7, pair_3, 32°C, date: 08.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: MCF-7
treatment: 32 C
|
Sample ID: RLT-016, Description: Serie_B, MCF-7, pair_3, 32°C, date: 08.02.2010
|
| Sample_geo_accession | GSM860200
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860200/suppl/GSM860200_Christgen20012_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860201 | GPL570 |
|
BT-474, pair_1, 37°C, date 25.01.2010
|
BT-474, pair_1, 37°C, date 25.01.2010
|
condition: p53 status off
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 37 C
|
Sample ID: RLT-007, Description: Serie_C, BT-474, pair_1, 37°C, date 25.01.2010
|
| Sample_geo_accession | GSM860201
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860201/suppl/GSM860201_Christgen20013_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860202 | GPL570 |
|
BT-474, pair_1, 32°C, date: 25.01.2010
|
BT-474, pair_1, 32°C, date: 25.01.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 32 C
|
Sample ID: RLT-008, Description: Serie_c, BT-474, pair_1, 32°C, date: 25.01.2010
|
| Sample_geo_accession | GSM860202
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860202/suppl/GSM860202_Christgen20014_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860203 | GPL570 |
|
BT-474, pair_2, 37°C, date 01.02.2010
|
BT-474, pair_2, 37°C, date 01.02.2010
|
condition: p53 status off
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 37 C
|
Sample ID: RLT-013, Description: Serie_C, BT-474, pair_2, 37°C, date 01.02.2010
|
| Sample_geo_accession | GSM860203
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860203/suppl/GSM860203_Christgen20015_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860204 | GPL570 |
|
BT-474, pair_2, 32°C, date: 01.02.2010
|
BT-474, pair_2, 32°C, date: 01.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 32 C
|
Sample ID: RLT-014, Description: Serie_c, BT-474, pair_2, 32°C, date: 01.02.2010
|
| Sample_geo_accession | GSM860204
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860204/suppl/GSM860204_Christgen20016_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860205 | GPL570 |
|
BT-474, pair_3, 37°C, date 08.0122010
|
BT-474, pair_3, 37°C, date 08.0122010
|
condition: p53 status off
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 37 C
|
Sample ID: RLT-017, Description: Serie_C, BT-474, pair_3, 37°C, date 08.0122010
|
| Sample_geo_accession | GSM860205
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860205/suppl/GSM860205_Christgen20017_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
GSM860206 | GPL570 |
|
BT-474, pair_3, 32°C, date: 08.02.2010
|
BT-474, pair_3, 32°C, date: 08.02.2010
|
condition: p53 status on
source tissue: human ductal breast cancer
cell line: BT-474
treatment: 32 C
|
Sample ID: RLT-018, Description: Serie_c, BT-474, pair_3, 32°C, date: 08.02.2010
|
| Sample_geo_accession | GSM860206
| | Sample_status | Public on Dec 31 2012
| | Sample_submission_date | Jan 11 2012
| | Sample_last_update_date | Dec 31 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNAeasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at conditions recommended by the manufacturer. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GCS 3000.
| | Sample_data_processing | RMA summarization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Robert,,Geffers
| | Sample_contact_email | robert.geffers@helmholtz-hzi.de
| | Sample_contact_phone | +49 531-6181-3058
| | Sample_contact_laboratory | Array Facility
| | Sample_contact_department | Dep. Cell Biology
| | Sample_contact_institute | HCI - Helmholtz Centre for Infection Research
| | Sample_contact_address | Inhoffenstr. 7
| | Sample_contact_city | Braunschweig
| | Sample_contact_zip/postal_code | 38124
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM860nnn/GSM860206/suppl/GSM860206_Christgen20018_HG-U133_Plus_2.CEL.gz
| | Sample_series_id | GSE35006
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
