Search results for the GEO ID: GSE35044  |
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(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM861279 | GPL1261 |
|
Telomerase+ parental
|
G3 Atm-/-TERT-ER T-cell lymphoma parental
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: Telomerase
|
RD2010050521
|
| Sample_geo_accession | GSM861279
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861279/suppl/GSM861279_RD2010050521.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861280 | GPL1261 |
|
Telomerase+ P4-1
|
G3 Atm-/-TERT-ER T-cell lymphoma #1 on 4-OHT passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: Telomerase
|
RD2010050522
|
| Sample_geo_accession | GSM861280
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861280/suppl/GSM861280_RD2010050522.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861281 | GPL1261 |
|
Telomerase+ P4-2
|
G3 Atm-/-TERT-ER T-cell lymphoma #2 on 4-OHT passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: Telomerase
|
RD2010050523
|
| Sample_geo_accession | GSM861281
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861281/suppl/GSM861281_RD2010050523.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861282 | GPL1261 |
|
Telomerase+ P4-3
|
G3 Atm-/-TERT-ER T-cell lymphoma #3 on 4-OHT passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: Telomerase
|
RD2010050524
|
| Sample_geo_accession | GSM861282
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861282/suppl/GSM861282_RD2010050524.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861283 | GPL1261 |
|
ALT+ P4-1
|
G3 Atm-/-TERT-ER T-cell lymphoma #1 on vehicle passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: alternative lengthening of telomeres (ALT)
|
RD2010050525
|
| Sample_geo_accession | GSM861283
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861283/suppl/GSM861283_RD2010050525.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861284 | GPL1261 |
|
ALT+ P4-2
|
G3 Atm-/-TERT-ER T-cell lymphoma #2 on vehicle passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: alternative lengthening of telomeres (ALT)
|
RD2010050527
|
| Sample_geo_accession | GSM861284
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861284/suppl/GSM861284_RD2010050527.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861285 | GPL1261 |
|
ALT+ P4-3
|
G3 Atm-/-TERT-ER T-cell lymphoma #3 on vehicle passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: alternative lengthening of telomeres (ALT)
|
RD2010050528
|
| Sample_geo_accession | GSM861285
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861285/suppl/GSM861285_RD2010050528.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861286 | GPL1261 |
|
ALT+ P4-4
|
G3 Atm-/-TERT-ER T-cell lymphoma #4 on vehicle passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: alternative lengthening of telomeres (ALT)
|
RD2010050529
|
| Sample_geo_accession | GSM861286
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861286/suppl/GSM861286_RD2010050529.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
| | |
|
GSM861287 | GPL1261 |
|
ALT+ P4-5
|
G3 Atm-/-TERT-ER T-cell lymphoma #5 on vehicle passage 4
|
recipient strain: SCID
genotype/variation: G3 Atm-/-TERT-ER
cell type: T-cell lymphoma
telomere maintanence mechanism: alternative lengthening of telomeres (ALT)
|
RD2010050530
|
| Sample_geo_accession | GSM861287
| | Sample_status | Public on Jan 17 2012
| | Sample_submission_date | Jan 12 2012
| | Sample_last_update_date | Jan 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Recipient SCID mice were maintained either on 4-OHT or vehicle
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNAs were extracted with Qiagen Rneasy kit following according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | The fragmented product is labeled via enzymatic attachment of a biotin-labeled nucleotide to the 3’-hydroxyl end of the fragmented cDNA.
| | Sample_hyb_protocol | The biotinylated cDNA is added to a hybridization solution containing several biotinylated control oligonucleotides (for quality control), and hybridized to a microarray chip overnight at 45°C.
| | Sample_scan_protocol | Each cDNA bound at its complementary oligonucleotide is excited using a confocal laser scanner, and the positions and intensities of the fluorescent emissions are captured. These measures provide the basis of subsequent biostatistical analysis.
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Jian,,Hu
| | Sample_contact_laboratory | Ron DePinho
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | MD Anderson Cancer Center
| | Sample_contact_address | 1515 Holcombe Blvd
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861287/suppl/GSM861287_RD2010050530.CEL.gz
| | Sample_series_id | GSE35044
| | Sample_series_id | GSE35046
| | Sample_data_row_count | 45101
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