Search results for the GEO ID: GSE35091  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM861865 | GPL1261 |
|
mandible_at_E9.7_M_embryo
|
Medial region Mandibular arch from E9.7 mouse embryos
|
strain: ICR
developmental stage: E9.7
tissue: Mandibular arches
region: Medial
|
Mus_E9.7_MA_M
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861865
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861865/suppl/GSM861865.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861865/suppl/GSM861865.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861866 | GPL1261 |
|
mandible_at_E9.7_L_embryo
|
Lateral region Mandibular arch from E9.7 mouse embryos
|
strain: ICR
developmental stage: E9.7
tissue: Mandibular arches
region: Lateral
|
Mus_E9.7_MA_L
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861866
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861866/suppl/GSM861866.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861866/suppl/GSM861866.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861867 | GPL1261 |
|
mandible_at_E10.5_M_embryo rep1
|
Medial region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Medial
|
Mus_E10.5_MA_M-1
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861867
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861867/suppl/GSM861867.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861867/suppl/GSM861867.TXT.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861868 | GPL1261 |
|
mandible_at_E10.5_M_embryo rep2
|
Medial region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Medial
|
Mus_E10.5_MA_M-2
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861868
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861868/suppl/GSM861868.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861868/suppl/GSM861868.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861869 | GPL1261 |
|
mandible_at_E10.5_M_embryo rep3
|
Medial region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Medial
|
Mus_E10.5_MA_M-3
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861869
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861869/suppl/GSM861869.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861869/suppl/GSM861869.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861870 | GPL1261 |
|
mandible_at_E10.5_L_embryo rep1
|
Lateral region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Lateral
|
Mus_E10.5_MA_L-1
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861870
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861870/suppl/GSM861870.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861870/suppl/GSM861870.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861871 | GPL1261 |
|
mandible_at_E10.5_L_embryo rep2
|
Lateral region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Lateral
|
Mus_E10.5_MA_L-2
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861871
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861871/suppl/GSM861871.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861871/suppl/GSM861871.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861872 | GPL1261 |
|
mandible_at_E10.5_L_embryo rep3
|
Lateral region Mandibular arch from E10.5 mouse embryos
|
strain: ICR
developmental stage: E10.5
tissue: Mandibular arches
region: Lateral
|
Mus_E10.5_MA_L-3
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861872
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861872/suppl/GSM861872.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861872/suppl/GSM861872.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
| | |
|
GSM861873 | GPL1261 |
|
mandible_at_E11.5_M_embryo rep1
|
Medial region Mandibular arch from E11.5 mouse embryos
|
strain: ICR
developmental stage: E11.5
tissue: Mandibular arches
region: Medial
|
Mus_E11.5_MA_M-1
Gene expression data from 40 embryos
|
| Sample_geo_accession | GSM861873
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861873/suppl/GSM861873.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861873/suppl/GSM861873.TXT.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
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GSM861874 | GPL1261 |
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mandible_at_E11.5_M_embryo rep2
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Medial region Mandibular arch from E11.5 mouse embryos
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strain: ICR
developmental stage: E11.5
tissue: Mandibular arches
region: Medial
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Mus_E11.5_MA_M-2
Gene expression data from 40 embryos
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| Sample_geo_accession | GSM861874
| | Sample_status | Public on Jul 13 2012
| | Sample_submission_date | Jan 13 2012
| | Sample_last_update_date | Jul 13 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Dams were sacrificed by cervical dislocation and the uteri dissected out were placed in Hanks’ balanced salt solution (HBSS) at 4C. Embryos were rinsed with fresh HBSS to remove amniotic fluid and blood. Mandibular arches were collected from the embryos.
| | Sample_growth_protocol_ch1 | Timed-pregnant ICR mice were kept under a 12-h light-dark cycle and were given standard laboratory fodder and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from the sample using RNeasy Micro Kit (QIAGEN) according to the manufacturer's instruction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 3 ug total RNA.
| | Sample_hyb_protocol | cRNA were hybridized for 16 hr at 45C on GeneChip Microarray (Mouse expression 430 2.0, Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The expression value and detection calls were computed from the raw data by following the procedures outlined for the Affymetrix Microarray Suite version 5.0 software. A whole gene list of the microarray analyses was built by GeneSpring software version 7.3.1 (Silicon Genetics Inc.).
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Yuuichi,,Soeno
| | Sample_contact_email | patho-aoba@tky.ndu.ac.jp
| | Sample_contact_phone | 81-3-3261-8921
| | Sample_contact_fax | 81-3-3261-8969
| | Sample_contact_department | Pathology
| | Sample_contact_institute | The Nippon Dental University
| | Sample_contact_address | 1-9-20 Fujimi, Chiyoda-ku
| | Sample_contact_city | Tokyo
| | Sample_contact_zip/postal_code | 102-8159
| | Sample_contact_country | Japan
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861874/suppl/GSM861874.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM861nnn/GSM861874/suppl/GSM861874.txt.gz
| | Sample_series_id | GSE35091
| | Sample_data_row_count | 45101
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