Search results for the GEO ID: GSE3524  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM80460 | GPL96 |
|
OSCE-2T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell epithelium tissue
Patient code:OSCC-2
Age:58
Sex:F
TNM:T2N0M0
ABBREVIATION:TNM,TUMOR-NODE-METASTASIS
|
SERIES OF 16 TUMORS
|
| Sample_geo_accession | GSM80460
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | BIOTIN
| | Sample_data_processing | The initial analysis of generated Affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program(Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80460/suppl/GSM80460.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80461 | GPL96 |
|
OSCE-4T
|
Oral Squamous cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-4
Primary Site:Floor of the mouth
Age:60
Sex:M
TNM:T4N1M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80461
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80461/suppl/GSM80461.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80462 | GPL96 |
|
OSCE-6T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-6
Primary Site:Vestibule
Age:72
Sex:M
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80462
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80462/suppl/GSM80462.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80463 | GPL96 |
|
OSCE-5T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-5
Primary Site:Tongue
Age:64
Sex:M
TNM:T1N2bM0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80463
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80463/suppl/GSM80463.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80464 | GPL96 |
|
OSCE-7T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-7
Primary Site:Floor of mouth
Age:48
Sex:M
TNM:
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80464
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80464/suppl/GSM80464.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80465 | GPL96 |
|
OSCE-8T
|
Oral Squamous cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-8
Primary Site:Tongue
Age:77
Sex:M
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80465
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80465/suppl/GSM80465.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80466 | GPL96 |
|
OSCE-9T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-9
Primary Site:Tongue
Age:66
Sex:M
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80466
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80466/suppl/GSM80466.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80467 | GPL96 |
|
OSCE-10T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-10
Primary Site:Tongue
Age:64
Sex:M
TNM:T4N2bM0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80467
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80467/suppl/GSM80467.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80468 | GPL96 |
|
OSCE-11T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-11
Primary Site:Tongue
Age:32
Sex:M
TNM:T3N2bM0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80468
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80468/suppl/GSM80468.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80469 | GPL96 |
|
OSCE-12T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-12
Primary Site:Maxilla
Age:46
Sex:Male
TNM:T4N0M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80469
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80469/suppl/GSM80469.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80470 | GPL96 |
|
OSCE-13T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-13
Primary Site:Floor of Mouth
Age:54
Sex:M
TNM:
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80470
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80470/suppl/GSM80470.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80471 | GPL96 |
|
OSCE-14T
|
Oral Squamous cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-14
Primary Site:Floor of Mouth
Age:60
Sex:F
TNM:T4N2bM0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80471
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80471/suppl/GSM80471.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80472 | GPL96 |
|
OSCE-15T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-15
Primary Site:Floor of Mouth
Age:51
Sex:M
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80472
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80472/suppl/GSM80472.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
| | |
|
GSM80473 | GPL96 |
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OSCE-16T
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Oral Squamous Cell Epithelium Tissue
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Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-16
Primary Site:Mandible
Age:50
Sex:F
TNM:T4N0M0
Abbreviation:TNM,Tumor-node-metastasis
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Series of 16 Tumors
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| Sample_geo_accession | GSM80473
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80473/suppl/GSM80473.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80474 | GPL96 |
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OSCE-17T
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Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-17
Primary Site:Tongue
Age:47
Sex:M
TNM:T4N3M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80474
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80474/suppl/GSM80474.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80475 | GPL96 |
|
OSCE-18T
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Tumor
Patient Code:OSCC-18
Primary Site:Floor of Mouth
Age:52
Sex:M
TNM:T4N2M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 16 Tumors
|
| Sample_geo_accession | GSM80475
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80475/suppl/GSM80475.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80476 | GPL96 |
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OSCE-2N
|
Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Normal
Patient Code:OSCC-2
Primary Site:Floor of Mouth
Age:58
Sex:F
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
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Series of 4 Normals
|
| Sample_geo_accession | GSM80476
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80476/suppl/GSM80476.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80477 | GPL96 |
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OSCE-9N
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Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Normal
Patient Code:OSCC-9
Primary Site:Tongue
Age:66
Sex:M
TNM:T2N0M0
Abbreviation:TNM,Tumor-node-metastasis
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Series of 4 Normals
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| Sample_geo_accession | GSM80477
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 27 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80477/suppl/GSM80477.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80520 | GPL96 |
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OSCE-14N
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Oral Squamous Cell Epithelium Tissue
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Oral Squamous cell Epithelium Tissue-Normal
Patient Code:OSCC-14
Primary Site:Floor of mouth
Age:60
Sex:F
TNM:T4N2bM0
Abbreviation:TNM,Tumor-node-metastasis
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Series of 4 Normals
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| Sample_geo_accession | GSM80520
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 28 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80520/suppl/GSM80520.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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GSM80521 | GPL96 |
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OSCE-18N
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Oral Squamous Cell Epithelium Tissue
|
Oral Squamous cell Epithelium Tissue-Normal
Patient Code:OSCC-18
Primary Site:Floor of Mouth
Age:52
Sex:M
TNM:T4N2M0
Abbreviation:TNM,Tumor-node-metastasis
|
Series of 4 Normals
|
| Sample_geo_accession | GSM80521
| | Sample_status | Public on Dec 01 2005
| | Sample_submission_date | Oct 28 2005
| | Sample_last_update_date | Nov 09 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | The initial analysis of generated affymetrix data was performed with their MAS 5.0 software.The chip data were scaled to 500,then exported as text files to be loaded into the Genespring 6.0 program (Silicon Genetics,Redwood City,CA).The prescaled data were normalized by using the normalization steps”per chip to 50th percentile” and “per gene to median” as recommended by the manufacturer.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Gokce,,Toruner
| | Sample_contact_email | torunega@umdnj.edu
| | Sample_contact_phone | 973-854-3456
| | Sample_contact_laboratory | Center for Applied Genomics
| | Sample_contact_department | Center for Human and Molecular Genetics
| | Sample_contact_institute | UMDNJ-NJ Medical School
| | Sample_contact_address | 225 Warren Street W410Q
| | Sample_contact_city | Newark
| | Sample_contact_state | NJ
| | Sample_contact_zip/postal_code | 07103
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM80nnn/GSM80521/suppl/GSM80521.CEL.gz
| | Sample_series_id | GSE3524
| | Sample_data_row_count | 14119
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