Search results for the GEO ID: GSE35283  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM865115 | GPL570 |
|
control monocytes, set 2, biological rep1
|
control monocytes, biological rep1
|
cell type: primary human monocytes
infection: control
|
Gene expression data from control monocytes
|
| Sample_geo_accession | GSM865115
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865115/suppl/GSM865115_MS25_Sample1_KO_V13_20081103_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865115/suppl/GSM865115_MS25_Sample1_KO_V13_20081103_2.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865116 | GPL570 |
|
control monocytes, set 2, biological rep2
|
control monocytes, biological rep2
|
cell type: primary human monocytes
infection: control
|
Gene expression data from control monocytes
|
| Sample_geo_accession | GSM865116
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865116/suppl/GSM865116_MS25_Sample7_ko_V25_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865116/suppl/GSM865116_MS25_Sample7_ko_V25_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865117 | GPL570 |
|
control monocytes, set 2, biological rep3
|
control monocytes, biological rep3
|
cell type: primary human monocytes
infection: control
|
Gene expression data from control monocytes
|
| Sample_geo_accession | GSM865117
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865117/suppl/GSM865117_MS25_Sample11_ko_V26_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865117/suppl/GSM865117_MS25_Sample11_ko_V26_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865118 | GPL570 |
|
PR8-infected monocytes, set 2, biological rep1
|
PR8-infected monocytes, biological rep1
|
cell type: primary human monocytes
infection: PR8-infected
|
Gene expression data from PR8-infected monocytes
|
| Sample_geo_accession | GSM865118
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865118/suppl/GSM865118_MS25_Sample2_PR8_V13_20081103_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865118/suppl/GSM865118_MS25_Sample2_PR8_V13_20081103_2.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865119 | GPL570 |
|
PR8-infected monocytes, set 2, biological rep2
|
PR8-infected monocytes, biological rep2
|
cell type: primary human monocytes
infection: PR8-infected
|
Gene expression data from PR8-infected monocytes
|
| Sample_geo_accession | GSM865119
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865119/suppl/GSM865119_MS25_Sample10_PR8_V25_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865119/suppl/GSM865119_MS25_Sample10_PR8_V25_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865120 | GPL570 |
|
PR8-infected monocytes, set 2, biological rep3
|
PR8-infected monocytes, biological rep3
|
cell type: primary human monocytes
infection: PR8-infected
|
Gene expression data from PR8-infected monocytes
|
| Sample_geo_accession | GSM865120
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865120/suppl/GSM865120_MS25_Sample14_PR8_V26_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865120/suppl/GSM865120_MS25_Sample14_PR8_V26_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865121 | GPL570 |
|
FPV-infected monocytes, set 2, biological rep1
|
FPV-infected monocytes, biological rep1
|
cell type: primary human monocytes
infection: FPV-infected
|
Gene expression data from FPV-infected monocytes
|
| Sample_geo_accession | GSM865121
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865121/suppl/GSM865121_MS25_Sample4_PPV_V13_20081103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865121/suppl/GSM865121_MS25_Sample4_PPV_V13_20081103.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865122 | GPL570 |
|
FPV-infected monocytes, set 2, biological rep2
|
FPV-infected monocytes, biological rep2
|
cell type: primary human monocytes
infection: FPV-infected
|
Gene expression data from FPV-infected monocytes
|
| Sample_geo_accession | GSM865122
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865122/suppl/GSM865122_MS25_Sample9_FPV_V25_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865122/suppl/GSM865122_MS25_Sample9_FPV_V25_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865123 | GPL570 |
|
FPV-infected monocytes, set 2, biological rep3
|
FPV-infected monocytes, biological rep3
|
cell type: primary human monocytes
infection: FPV-infected
|
Gene expression data from FPV-infected monocytes
|
| Sample_geo_accession | GSM865123
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865123/suppl/GSM865123_MS25_Sample13_FPV_V26_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865123/suppl/GSM865123_MS25_Sample13_FPV_V26_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865124 | GPL570 |
|
H5N1-infected monocytes, set 2, biological rep1
|
H5N1-infected monocytes, biological rep1
|
cell type: primary human monocytes
infection: H5N1-infected
|
Gene expression data from H5N1-infected monocytes
|
| Sample_geo_accession | GSM865124
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865124/suppl/GSM865124_MS25_Sample3_H5N1_V13_20081103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865124/suppl/GSM865124_MS25_Sample3_H5N1_V13_20081103.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
|
GSM865125 | GPL570 |
|
H5N1-infected monocytes, set 2, biological rep2
|
H5N1-infected monocytes, biological rep2
|
cell type: primary human monocytes
infection: H5N1-infected
|
Gene expression data from H5N1-infected monocytes
|
| Sample_geo_accession | GSM865125
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865125/suppl/GSM865125_MS25_Sample8_H5N1_V25_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865125/suppl/GSM865125_MS25_Sample8_H5N1_V25_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
| | |
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GSM865126 | GPL570 |
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H5N1-infected monocytes, set 2, biological rep3
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H5N1-infected monocytes, biological rep3
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cell type: primary human monocytes
infection: H5N1-infected
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Gene expression data from H5N1-infected monocytes
|
| Sample_geo_accession | GSM865126
| | Sample_status | Public on Jul 01 2013
| | Sample_submission_date | Jan 23 2012
| | Sample_last_update_date | Jul 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Rneasy
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA were prepared and SAGE-labeld according to the manufacturer’s instructions (Affymetrix, Santa Clara, CA, USA from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 3000.
| | Sample_data_processing | The data were analyzed with (GCOS) version 1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dorothee,,Viemann
| | Sample_contact_email | Viemann.Dorothee@mh-hannover.de
| | Sample_contact_phone | +49-511-532 - 7823
| | Sample_contact_department | Department of Pediatric Pulmonology, Allergy and Neonatology
| | Sample_contact_institute | Hannover Medical School
| | Sample_contact_address | Carl-Neuberg-Straße 1
| | Sample_contact_city | Hannover
| | Sample_contact_state | Deutschland
| | Sample_contact_zip/postal_code | 30625
| | Sample_contact_country | Germany
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865126/suppl/GSM865126_MS25_Sample12_H5N1_V26_20090113.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM865nnn/GSM865126/suppl/GSM865126_MS25_Sample12_H5N1_V26_20090113.CHP.gz
| | Sample_series_id | GSE35283
| | Sample_data_row_count | 54675
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