Search results for the GEO ID: GSE35478 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM869232 | GPL570 |
|
HCT-116_cell_line
|
HCT-116_cell_line
|
cell source: ATCC
age: 50
gender: male
differentiation: poorly
dukes stage: n.k.
origin: primary
cell type: cell-line
|
Gene expression data from cell-line
|
Sample_geo_accession | GSM869232
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869232/suppl/GSM869232.cel.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869233 | GPL570 |
|
HCT-116LX_xenograft
|
HCT-116LX_xenograft
|
cell source: ATCC
age: 50
gender: male
differentiation: poorly
dukes stage: n.k.
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869233
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869233/suppl/GSM869233.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869234 | GPL570 |
|
HT-29_cell_line
|
HT-29_cell_line
|
cell source: NCI
age: 44
gender: female
differentiation: middle
dukes stage: n.k.
origin: primary
cell type: cell-line
|
Gene expression data from cell-line
|
Sample_geo_accession | GSM869234
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869234/suppl/GSM869234.cel.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869235 | GPL570 |
|
SW-620_xenograft
|
SW-620_xenograft
|
cell source: NCI
age: 51
gender: male
differentiation: poorly
dukes stage: C
origin: metastasis
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869235
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869235/suppl/GSM869235.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869236 | GPL570 |
|
DLD-1_xenograft
|
DLD-1_xenograft
|
cell source: NCI
age: 50
gender: male
differentiation: middle
dukes stage: C
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869236
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869236/suppl/GSM869236.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869237 | GPL570 |
|
HCT-15_xenograft
|
HCT-15_xenograft
|
cell source: ATCC
age: 50
gender: male
differentiation: middle
dukes stage: C
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869237
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869237/suppl/GSM869237.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869238 | GPL570 |
|
269L_cell_line
|
269L_cell_line
|
cell source: Oncotest
age: 56
gender: male
differentiation: poorly
dukes stage: C
origin: primary
cell type: cell-line
|
Gene expression data from cell-line
|
Sample_geo_accession | GSM869238
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869238/suppl/GSM869238.cel.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869239 | GPL570 |
|
94_xenograft
|
94_xenograft
|
cell source: Oncotest
age: 70
gender: male
differentiation: middle
dukes stage: n.k.
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869239
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869239/suppl/GSM869239.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869240 | GPL570 |
|
94L_cell_line
|
94L_cell_line
|
cell source: Oncotest
age: 70
gender: male
differentiation: middle
dukes stage: n.k.
origin: primary
cell type: cell-line
|
Gene expression data from cell-line
|
Sample_geo_accession | GSM869240
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869240/suppl/GSM869240.cel.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869241 | GPL570 |
|
COLO 205_xenograft
|
COLO 205_xenograft
|
cell source: NCI
age: 70
gender: male
differentiation: poorly
dukes stage: D
origin: metastasis
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869241
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869241/suppl/GSM869241.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869242 | GPL570 |
|
HCC-2998_xenograft
|
HCC-2998_xenograft
|
cell source: NCI
age: n.k.
gender: n.k.
differentiation: well
dukes stage: n.k.
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869242
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869242/suppl/GSM869242.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869243 | GPL570 |
|
269_xenograft
|
269_xenograft
|
cell source: Oncotest
age: 56
gender: male
differentiation: poorly
dukes stage: C
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869243
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869243/suppl/GSM869243.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869244 | GPL570 |
|
243_xenograft
|
243_xenograft
|
cell source: Oncotest
age: 45
gender: male
differentiation: poorly
dukes stage: n.k.
origin: primary
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869244
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869244/suppl/GSM869244.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869245 | GPL570 |
|
280_xenograft
|
280_xenograft
|
cell source: Oncotest
age: 56
gender: female
differentiation: poorly
dukes stage: n.k.
origin: metastasis
cell type: xenograft
|
Gene expression data from xenograft
|
Sample_geo_accession | GSM869245
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869245/suppl/GSM869245.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
| |
|
GSM869246 | GPL570 |
|
1103_xenograft
|
1103_xenograft
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cell source: Oncotest
age: 56
gender: male
differentiation: poorly
dukes stage: n.k.
origin: primary
cell type: xenograft
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Gene expression data from xenograft
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Sample_geo_accession | GSM869246
| Sample_status | Public on Feb 02 2012
| Sample_submission_date | Feb 01 2012
| Sample_last_update_date | Feb 02 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNeasy extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Standard Affymetix protocol for 3' IVT design
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| Sample_data_processing | The data were analysed using the Bioconductor software [gcrma package] in the R statistical computing environment
| Sample_platform_id | GPL570
| Sample_contact_name | Jaga,,Virayah
| Sample_contact_email | Jaga.Virayah@oncotest.de
| Sample_contact_institute | Oncotest GmbH
| Sample_contact_address | Am Flughafen 12-14
| Sample_contact_city | Freiburg
| Sample_contact_zip/postal_code | D-79108
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869246/suppl/GSM869246.CEL.gz
| Sample_series_id | GSE35478
| Sample_data_row_count | 54675
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