Search results for the GEO ID: GSE35481  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM869268 | GPL1261 |
|
KO1
|
jejunum crypt samples of Sox9 deficient mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: Sox9 deficient mice
|
|
| Sample_geo_accession | GSM869268
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869268/suppl/GSM869268.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
|
GSM869269 | GPL1261 |
|
KO2
|
jejunum crypt samples of Sox9 deficient mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: Sox9 deficient mice
|
|
| Sample_geo_accession | GSM869269
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869269/suppl/GSM869269.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
|
GSM869270 | GPL1261 |
|
KO3
|
jejunum crypt samples of Sox9 deficient mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: Sox9 deficient mice
|
|
| Sample_geo_accession | GSM869270
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869270/suppl/GSM869270.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
|
GSM869271 | GPL1261 |
|
WT1
|
jejunum crypt samples of wild type control mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: wild type
|
|
| Sample_geo_accession | GSM869271
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869271/suppl/GSM869271.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
|
GSM869272 | GPL1261 |
|
WT2
|
jejunum crypt samples of wild type control mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: wild type
|
|
| Sample_geo_accession | GSM869272
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869272/suppl/GSM869272.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
|
GSM869273 | GPL1261 |
|
WT3
|
jejunum crypt samples of wild type control mice
|
tissue: jejunum crypt
strain: C57BL/6
genotype/variation: wild type
|
|
| Sample_geo_accession | GSM869273
| | Sample_status | Public on Mar 23 2012
| | Sample_submission_date | Feb 01 2012
| | Sample_last_update_date | Mar 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from crypt samples of Sox9 mutant mice and their littermate controls using the TRIzol reagent (Invitrogen) and treated with Rnase-free DNase (Roche).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix One Cycle Target and Labeling Protocol, exactly as described in Affymetrix Expression Analysis Technical Manual
| | Sample_hyb_protocol | Affymetrix One Cycle Target and Labeling Protocol Hybridization and Staining, as described in Expression Analysis Technical Manual with following exception(s): Hybridization volume increased to 250.0µL. Fluidics Script: EukGE ws2v5
| | Sample_scan_protocol | GeneChip® Scanner 3000, GCOS version 1.2
| | Sample_data_processing | All data analyzed using Genespring 7.0 or R/Bioconductor using GCRMA and limma
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Toni-Ann,,Mistretta
| | Sample_contact_laboratory | Feigin Research
| | Sample_contact_department | Pathology
| | Sample_contact_institute | Baylor College of Medicine
| | Sample_contact_address | 1 Baylor Plaza, BCM 315
| | Sample_contact_city | Houston
| | Sample_contact_state | TX
| | Sample_contact_zip/postal_code | 77030
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM869nnn/GSM869273/suppl/GSM869273.CEL.gz
| | Sample_series_id | GSE35481
| | Sample_data_row_count | 45101
| | |
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