Search results for the GEO ID: GSE35566  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM870721 | GPL570 |
|
RKO E1
|
RKO
|
cell line: RKO
replicate: E1
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870721
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870721/suppl/GSM870721_JMM-HG_U133_Plus_2-5212_RKO_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870722 | GPL570 |
|
RKO E2
|
RKO
|
cell line: RKO
replicate: E2
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870722
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870722/suppl/GSM870722_JMM-HG_U133_Plus_2-5214_RKO_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870723 | GPL570 |
|
SW48 E2
|
SW48
|
cell line: SW48
replicate: E2
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870723
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870723/suppl/GSM870723_JMM-HG_U133_Plus_2-5216_SW48_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870724 | GPL570 |
|
HT29 E2
|
HT29
|
cell line: HT29
replicate: E2
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870724
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870724/suppl/GSM870724_JMM-HG_U133_Plus_2-5218_HT29_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870725 | GPL570 |
|
T84 E1
|
T84
|
cell line: T84
replicate: E1
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870725
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870725/suppl/GSM870725_JMM-HG_U133_Plus_2-5220_T84_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870726 | GPL570 |
|
CACO2 E2
|
CACO2
|
cell line: CACO2
replicate: E2
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870726
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870726/suppl/GSM870726_JMM-HG_U133_Plus_2-5222_CACO_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870727 | GPL570 |
|
HCT116 E2
|
HCT116
|
cell line: HCT116
replicate: E2
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870727
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870727/suppl/GSM870727_JMM-HG_U133_Plus_2-5418_HCT116_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870728 | GPL570 |
|
SKCO1 E1
|
SKCO1
|
cell line: SKCO1
replicate: E1
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870728
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870728/suppl/GSM870728_JMM-HG_U133_Plus_2-5946_SKE_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870729 | GPL570 |
|
SKCO1 E2
|
SKCO1
|
cell line: SKCO1
replicate: E2
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870729
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870729/suppl/GSM870729_JMM-HG_U133_Plus_2-5948_SKE_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870730 | GPL570 |
|
LIM2405 E1
|
LIM2405
|
cell line: LIM2405
replicate: E1
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870730
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870730/suppl/GSM870730_JMM-HG_U133_Plus_2-5950_LME_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870731 | GPL570 |
|
LIM2405 E2
|
LIM2405
|
cell line: LIM2405
replicate: E2
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870731
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870731/suppl/GSM870731_JMM-HG_U133_Plus_2-5952_LME_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870732 | GPL570 |
|
HCC2998 E1
|
HCC2998
|
cell line: HCC2998
replicate: E1
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870732
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870732/suppl/GSM870732_JMM-HG_U133_Plus_2-5958_HCE_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870733 | GPL570 |
|
HCC2998 E2
|
HCC2998
|
cell line: HCC2998
replicate: E2
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870733
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870733/suppl/GSM870733_JMM-HG_U133_Plus_2-5960_HCE_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870734 | GPL570 |
|
LS174T E1
|
LS174T
|
cell line: LS174T
replicate: E1
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870734
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870734/suppl/GSM870734_JMM-HG_U133_Plus_2-5962_LSE_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870735 | GPL570 |
|
LS174T E2
|
LS174T
|
cell line: LS174T
replicate: E2
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870735
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870735/suppl/GSM870735_JMM-HG_U133_Plus_2-5964_LSE_E2C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870736 | GPL570 |
|
CACO2 E1
|
CACO2
|
cell line: CACO2
replicate: E1
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870736
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870736/suppl/GSM870736_LA-HG_U133_Plus_2-4906_CACO_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870737 | GPL570 |
|
HT29 E1
|
HT29
|
cell line: HT29
replicate: E1
mss/msi status: MSS
|
|
| Sample_geo_accession | GSM870737
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870737/suppl/GSM870737_LA-HG_U133_Plus_2-4908_HT29_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870738 | GPL570 |
|
HCT116 E1
|
HCT116
|
cell line: HCT116
replicate: E1
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870738
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870738/suppl/GSM870738_LA-HG_U133_Plus_2-4910_HCT116_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
GSM870739 | GPL570 |
|
SW48 E1
|
SW48
|
cell line: SW48
replicate: E1
mss/msi status: MSI
|
|
| Sample_geo_accession | GSM870739
| | Sample_status | Public on Feb 07 2012
| | Sample_submission_date | Feb 06 2012
| | Sample_last_update_date | Feb 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | untreated
| | Sample_growth_protocol_ch1 | cells cultured in DMEM + 10%FBS; harvested at exponentially growing phase
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy columns
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 5 ug of total RNA labelled using the Affymetrix One Cycle IVT-biotin labelling protocol
| | Sample_hyb_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_scan_protocol | performed at the Albert Einstein College of Medicine Microarray Facility (http://www.einstein.yu.edu/dna/Affy/affy%20main.htm)
| | Sample_data_processing | RMA normalized using Bioconductor; cell line replicates averaged, mean of MSS and MSI cell lines calculated
| | Sample_platform_id | GPL570
| | Sample_contact_name | John,,Mariadason
| | Sample_contact_email | john.mariadason@ludwig.edu.au
| | Sample_contact_phone | +613 9496 3068
| | Sample_contact_laboratory | Oncogenic Transcription
| | Sample_contact_department | Austin Health
| | Sample_contact_institute | Ludwig Institute for Cancer Reserach
| | Sample_contact_address | 145-163 Studley Road
| | Sample_contact_city | Heidelberg
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3084
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM870nnn/GSM870739/suppl/GSM870739_LA-HG_U133_Plus_2-4912_SW48_E1C.CEL.gz
| | Sample_series_id | GSE35566
| | Sample_data_row_count | 54675
| | |
|
| |
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(2 groups will be compared at a time) |
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