Search results for the GEO ID: GSE35603  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM871443 | GPL570 |
|
Lung Cancer Tumor Stem-Like Cells, CD133(+), biological replicate 1
|
A549, FACS gating, CD133(+)
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871443
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871443/suppl/GSM871443.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871444 | GPL570 |
|
Lung Cancer Tumor Stem-Like Cells, CD133(+), biological replicate 2
|
A549, FACS gating, CD133(+)
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871444
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871444/suppl/GSM871444.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871445 | GPL570 |
|
Lung Cancer Tumor Stem-Like Cells, CD133(+), biological replicate 3
|
A549, FACS gating, CD133(+)
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871445
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871445/suppl/GSM871445.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871446 | GPL570 |
|
Lung Cancer Tumor Stem-Like Cells, radio-resistant
|
A549, radio-resistant strain (3rd passage)
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871446
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871446/suppl/GSM871446.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871447 | GPL570 |
|
Lung Cancer Parental Tumor Cell, biological replicate 1
|
A549
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871447
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871447/suppl/GSM871447.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871448 | GPL570 |
|
Lung Cancer Parental Tumor Cell, biological replicate 2
|
A549
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871448
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871448/suppl/GSM871448.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871449 | GPL570 |
|
Lung Cancer Parental Tumor Cell, biological replicate 3
|
A549
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871449
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871449/suppl/GSM871449.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871450 | GPL570 |
|
Lung Cancer Tumor Stem-Like Cells, Snail over-expression
|
A549, Snail over-expression
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871450
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871450/suppl/GSM871450.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871451 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Parental Tumor Cell, biological replicate 1
|
AT/RT cancer cell
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871451
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871451/suppl/GSM871451.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871452 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 1
|
AT/RT cancer cell, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871452
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871452/suppl/GSM871452.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871453 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Parental Tumor Cell, biological replicate 2
|
Glioblastoma cancer cell, BT
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871453
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871453/suppl/GSM871453.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871454 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Parental Tumor Cell, biological replicate 3
|
Glioblastoma cancer cell, BT12
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871454
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871454/suppl/GSM871454.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871455 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Parental Tumor Cell, biological replicate 4
|
Glioblastoma cancer cell, BT16
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871455
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871455/suppl/GSM871455.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871456 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cells, Bmi1 over-expression
|
FaDu, Bmi1 overexpression
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871456
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871456/suppl/GSM871456.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871457 | GPL570 |
|
Oral Cancer, Parental Tumor Cell (FaDu), biological replicate 1
|
FaDu
|
cell type: PTC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871457
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871457/suppl/GSM871457.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871458 | GPL570 |
|
Oral Cancer, Parental Tumor Cell (FaDu), biological replicate 2
|
FaDu
|
cell type: PTC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871458
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871458/suppl/GSM871458.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871459 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cells, Twist over-expression
|
FaDu, Twist overexpression
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871459
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871459/suppl/GSM871459.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871460 | GPL570 |
|
H1 embryonic stem cells - GFP
|
GSM225042 from GSE9196
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871460
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871460/suppl/GSM871460.CEL.gz
| | Sample_relation | Reanalysis of: GSM225042
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871462 | GPL570 |
|
H1 hESC_20% O2 rep1
|
GSM241164 from GSE9510
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871462
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871462/suppl/GSM871462.CEL.gz
| | Sample_relation | Reanalysis of: GSM241164
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871463 | GPL570 |
|
H1 hESC_20% O2 rep2
|
GSM241166 from GSE9510
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871463
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871463/suppl/GSM871463.CEL.gz
| | Sample_relation | Reanalysis of: GSM241166
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871464 | GPL570 |
|
H1 hESC_4% O2 rep2
|
GSM241165 from GSE9510
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871464
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871464/suppl/GSM871464.CEL.gz
| | Sample_relation | Reanalysis of: GSM241165
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871465 | GPL570 |
|
H9 embryonic stem cells
|
GSM225045 from GSE9196
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871465
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871465/suppl/GSM871465.CEL.gz
| | Sample_relation | Reanalysis of: GSM225045
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871466 | GPL570 |
|
H9 hESC_20% O2 rep1
|
GSM241168 from GSE9510
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871466
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871466/suppl/GSM871466.CEL.gz
| | Sample_relation | Reanalysis of: GSM241168
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871467 | GPL570 |
|
H9 hESC_4% O2 rep1
|
GSM241167 from GSE9510
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871467
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871467/suppl/GSM871467.CEL.gz
| | Sample_relation | Reanalysis of: GSM241167
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871468 | GPL570 |
|
Embryonic Stem Cells, Cell line: Trizol with RNeasy_le1
|
GSM251563 from GSE9940
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871468
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871468/suppl/GSM871468.cel.gz
| | Sample_relation | Reanalysis of: GSM251563
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871469 | GPL570 |
|
Embryonic Stem Cells, Cell line: H9 hES cell RNA pool#2_e1_le1
|
GSM251570 from GSE9940
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871469
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871469/suppl/GSM871469.cel.gz
| | Sample_relation | Reanalysis of: GSM251570
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871470 | GPL570 |
|
Embryonic Stem Cells, Cell line: H9 hES cells pool#3_e1_le1
|
GSM251576 from GSE9940
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871470
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871470/suppl/GSM871470.cel.gz
| | Sample_relation | Reanalysis of: GSM251576
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871471 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 1
|
HT29
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871471
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871471/suppl/GSM871471.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871472 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 2
|
HT29
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871472
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871472/suppl/GSM871472.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871473 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 3
|
HT29 from E-GEOD-11440 of ArrayExpress
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871473
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871473/suppl/GSM871473.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871474 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 4
|
HT29 from E-GEOD-11440 of ArrayExpress
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871474
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871474/suppl/GSM871474.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871475 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 5
|
HT29 from E-GEOD-11440 of ArrayExpress
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871475
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871475/suppl/GSM871475.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871476 | GPL570 |
|
Colon Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 1
|
HT29, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871476
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871476/suppl/GSM871476.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871477 | GPL570 |
|
Colon Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 2
|
HT29, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871477
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871477/suppl/GSM871477.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871478 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Parental Tumor Cell, biological replicate 5
|
HTB186
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871478
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871478/suppl/GSM871478.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871479 | GPL570 |
|
Atypical Teratoid/Rhabdoid Tumor, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 2
|
HTB186
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871479
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871479/suppl/GSM871479.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871480 | GPL570 |
|
Breast Cancer, Parental Tumor Cell, biological replicate 1
|
MCF7
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871480
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871480/suppl/GSM871480.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871481 | GPL570 |
|
Breast Cancer, Parental Tumor Cell, biological replicate 2
|
MCF7 from E-MTAB-37 of ArrayExpress
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871481
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871481/suppl/GSM871481.cel.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871482 | GPL570 |
|
Breast Cancer, Parental Tumor Cell, biological replicate 3
|
MCF7 from GSE 10021 of GEO
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871482
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871482/suppl/GSM871482.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871483 | GPL570 |
|
Breast Cancer, Tumor Stem-Like Cell, Snail overexpression, stable clone
|
MCF7
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871483
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871483/suppl/GSM871483.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871484 | GPL570 |
|
Breast Cancer, Tumor Stem-Like Cell, Snail overexpression
|
MCF7
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871484
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871484/suppl/GSM871484.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871485 | GPL570 |
|
human oocyte, biological rep1
|
GSM304260 from GSE12034
|
cell type: ESC (oocyte)
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871485
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871485/suppl/GSM871485.CEL.gz
| | Sample_relation | Reanalysis of: GSM304260
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871486 | GPL570 |
|
human oocyte, biological rep2
|
GSM304261 from GSE12034
|
cell type: ESC (oocyte)
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871486
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871486/suppl/GSM871486.CEL.gz
| | Sample_relation | Reanalysis of: GSM304261
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871487 | GPL570 |
|
human oocyte, biological rep3
|
GSM304262 from GSE12034
|
cell type: ESC (oocyte)
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871487
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871487/suppl/GSM871487.CEL.gz
| | Sample_relation | Reanalysis of: GSM304262
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871488 | GPL570 |
|
Glioblastoma, Tumor Stem-Like Cell, radio-resistance, biological replicate 1
|
Primary culture, radio-resistance
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871488
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871488/suppl/GSM871488.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871489 | GPL570 |
|
Glioblastoma, Tumor Stem-Like Cell, radio-resistance, biological replicate 2
|
Primary culture, radio-resistance
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871489
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871489/suppl/GSM871489.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871490 | GPL570 |
|
Glioblastoma, Tumor Stem-Like Cell, radio-resistance, biological replicate 3
|
Primary culture, radio-resistance
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871490
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871490/suppl/GSM871490.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871491 | GPL570 |
|
Glioblastoma, Tumor Stem-Like Cell, radio-resistance, biological replicate 4
|
Primary culture, radio-resistance
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871491
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871491/suppl/GSM871491.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871492 | GPL570 |
|
Glioblastoma, Parental Tumor Cell, biological replicate 1
|
Primary culture, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871492
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871492/suppl/GSM871492.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871493 | GPL570 |
|
Glioblastoma, Parental Tumor Cell, biological replicate 2
|
Primary culture, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871493
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871493/suppl/GSM871493.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871494 | GPL570 |
|
Glioblastoma, Parental Tumor Cell, biological replicate 3
|
Primary culture, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871494
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871494/suppl/GSM871494.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871495 | GPL570 |
|
hES_SA01_1
|
GSM191033 from GSE7879
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871495
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871495/suppl/GSM871495.CEL.gz
| | Sample_relation | Reanalysis of: GSM191033
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871496 | GPL570 |
|
hES_SA01_2
|
GSM191034 from GSE7879
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871496
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871496/suppl/GSM871496.CEL.gz
| | Sample_relation | Reanalysis of: GSM191034
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871497 | GPL570 |
|
hES_SA01_3
|
GSM191035 from GSE7879
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871497
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871497/suppl/GSM871497.CEL.gz
| | Sample_relation | Reanalysis of: GSM191035
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871498 | GPL570 |
|
Oral Cancer, Parental Tumor Cell (SAS), biological replicate 1
|
SAS
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871498
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871498/suppl/GSM871498.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871499 | GPL570 |
|
Oral Cancer, Parental Tumor Cell (SAS), biological replicate 2
|
SAS
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871499
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871499/suppl/GSM871499.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871500 | GPL570 |
|
Oral Cancer, Parental Tumor Cell (SAS), biological replicate 3
|
SAS
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871500
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871500/suppl/GSM871500.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871501 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 1
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871501
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871501/suppl/GSM871501.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871502 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 2
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871502
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871502/suppl/GSM871502.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871503 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 3
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871503
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871503/suppl/GSM871503.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871504 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 4
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871504
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871504/suppl/GSM871504.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871505 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 5
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871505
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871505/suppl/GSM871505.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871506 | GPL570 |
|
Oral Cancer, Tumor Stem-Like Cell, sphere-forming cultivation, biological replicate 6
|
SAS, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871506
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871506/suppl/GSM871506.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871507 | GPL570 |
|
GSM194307: Sheff 4 hesc replicate 1
|
GSM194307: Sheff 4 hesc replicate 1 (GSE7896)
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871507
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871507/suppl/GSM871507.CEL.gz
| | Sample_relation | Reanalysis of: GSM194307
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871508 | GPL570 |
|
GSM194308: Sheff 4 hesc replicate 2
|
GSM194308: Sheff 4 hesc replicate 2 (GSE7896)
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871508
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871508/suppl/GSM871508.CEL.gz
| | Sample_relation | Reanalysis of: GSM194308
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871509 | GPL570 |
|
GSM194309: Sheff 4 hesc replicate 3
|
GSM194309: Sheff 4 hesc replicate 3 (GSE7896)
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871509
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871509/suppl/GSM871509.CEL.gz
| | Sample_relation | Reanalysis of: GSM194309
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871510 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 6
|
SW480
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871510
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871510/suppl/GSM871510.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871511 | GPL570 |
|
Colon Cancer, Parental Tumor Cell, biological replicate 7
|
SW480
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871511
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871511/suppl/GSM871511.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871513 | GPL570 |
|
Colon Cancer, Tumor Stem-Like Cell, Snail overexpression, biological replicate 2
|
SW480, Snail overexpression
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871513
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871513/suppl/GSM871513.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871514 | GPL570 |
|
Human embryonic stem cell line T3ES, biological rep1
|
GSM239824 from GSE9440
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871514
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871514/suppl/GSM871514.CEL.gz
| | Sample_relation | Reanalysis of: GSM239824
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871515 | GPL570 |
|
Human embryonic stem cell line T3ES, biological rep2
|
GSM239825 from GSE9440
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871515
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871515/suppl/GSM871515.CEL.gz
| | Sample_relation | Reanalysis of: GSM239825
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871516 | GPL570 |
|
Human embryonic stem cell line T3ES, biological rep3
|
GSM239826 from GSE9440
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871516
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871516/suppl/GSM871516.CEL.gz
| | Sample_relation | Reanalysis of: GSM239826
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871517 | GPL570 |
|
Glioblastoma, Parental Tumor Cell, biological replicate 4
|
U87mg
|
cell type: PTC
|
Gene expression data of Parental Tumor Cells
|
| Sample_geo_accession | GSM871517
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871517/suppl/GSM871517.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871518 | GPL570 |
|
Glioblastoma, Tumor Stem-Like Cell, sphere-forming cultivation
|
U87mg, sphere
|
cell type: TSLC
|
Gene expression data of Tumor Stem-like cells
|
| Sample_geo_accession | GSM871518
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871518/suppl/GSM871518.CEL.gz
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871519 | GPL570 |
|
hES_VUB01_1
|
GSM191030 from GSE7879
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871519
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871519/suppl/GSM871519.CEL.gz
| | Sample_relation | Reanalysis of: GSM191030
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
| | |
|
GSM871520 | GPL570 |
|
hES_VUB01_2
|
GSM191031 from GSE7879
|
cell type: ESC
|
Gene expression data of human embryonic stem cell
|
| Sample_geo_accession | GSM871520
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871520/suppl/GSM871520.CEL.gz
| | Sample_relation | Reanalysis of: GSM191031
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
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GSM871521 | GPL570 |
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hES_VUB01_3
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GSM191032 from GSE7879
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cell type: ESC
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Gene expression data of human embryonic stem cell
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| Sample_geo_accession | GSM871521
| | Sample_status | Public on Aug 17 2012
| | Sample_submission_date | Feb 07 2012
| | Sample_last_update_date | Aug 17 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | PMID: 21169409 PMID: 18612434
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip HG-U133_Plus_2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 (EukGE-WS2v5_450).
| | Sample_scan_protocol | GeneChips were scanned using the Scanner GSC3000 M10 type.
| | Sample_data_processing | justRMA( ) from and quantile normalization; standardized using 'Mfuzz'
| | Sample_platform_id | GPL570
| | Sample_contact_name | YAU-HUA,,YU
| | Sample_contact_email | yauhuayu@gmail.com
| | Sample_contact_institute | Harvard School of Dental Medicine
| | Sample_contact_address | 188 Longwood Ave.
| | Sample_contact_city | Boston
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM871nnn/GSM871521/suppl/GSM871521.CEL.gz
| | Sample_relation | Reanalysis of: GSM191032
| | Sample_series_id | GSE35603
| | Sample_data_row_count | 54675
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