Search results for the GEO ID: GSE35765  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM874589 | GPL1261 |
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S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated, biological rep1
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S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated
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strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: fluoxetine
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S100a10_KO_FLX_1
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| Sample_geo_accession | GSM874589
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874589/suppl/GSM874589.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
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GSM874590 | GPL1261 |
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S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated, biological rep2
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S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated
|
strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: fluoxetine
|
S100a10_KO_FLX_2
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| Sample_geo_accession | GSM874590
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874590/suppl/GSM874590.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
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GSM874591 | GPL1261 |
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S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated, biological rep1
|
S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated
|
strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: vehicle
|
S100a10_KO_VEH_1
|
| Sample_geo_accession | GSM874591
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874591/suppl/GSM874591.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
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GSM874592 | GPL1261 |
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S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated, biological rep2
|
S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated
|
strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: vehicle
|
S100a10_KO_VEH_2
|
| Sample_geo_accession | GSM874592
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874592/suppl/GSM874592.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
|
GSM874593 | GPL1261 |
|
S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated, biological rep3
|
S100a10 cells, p11 KO, cortex, TRAP RNA, FLX treated
|
strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: fluoxetine
|
S100a10_KO_FLX_3
|
| Sample_geo_accession | GSM874593
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874593/suppl/GSM874593.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
|
GSM874594 | GPL1261 |
|
S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated, biological rep3
|
S100a10 cells, p11 KO, cortex, TRAP RNA, VEH treated
|
strain: backcrossed 3-5 generations on C57BL/6 from FVB
rna: TRAP
driver: S100a10
line: ES691/p11 KO
tissue: cortex
treatment: vehicle
|
S100a10_KO_VEH_3
|
| Sample_geo_accession | GSM874594
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Feb 13 2012
| | Sample_last_update_date | Jul 29 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | S100a10 bacTRAP/p11 KO mice were administered either a fluoxetine (0.167 mg/ml)/1% saccharine solution (FLX) or 1% saccharine alone (VEH) for 15-18 days and then sacrificed for TRAP profiling.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice (see accompanying manuscript), followed by Trizol-LS extraction, DNase treatment, and RNeasy Minelute Cleanup.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 15 ng of total RNA.
| | Sample_hyb_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_scan_protocol | Standard Affymetrix protocol for the mouse 430 2.0 platform.
| | Sample_data_processing | GCRMA normalization within biological replicate groups was performed in GeneSpring GX 7.3.1.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Eric,F,Schmidt
| | Sample_contact_laboratory | Heintz
| | Sample_contact_institute | The Rockefeller Univeristy
| | Sample_contact_address | 1230 York Avenue
| | Sample_contact_city | New York
| | Sample_contact_state | NY
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM874nnn/GSM874594/suppl/GSM874594.CEL.gz
| | Sample_series_id | GSE35765
| | Sample_series_id | GSE35766
| | Sample_data_row_count | 45101
| | |
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