Search results for the GEO ID: GSE35825 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM875786 | GPL1261 |
|
Media rep1
|
Bone marrow macrophages, untreated (media only)
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: none
|
|
Sample_geo_accession | GSM875786
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875786/suppl/GSM875786.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875786/suppl/GSM875786.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875787 | GPL1261 |
|
Media rep2
|
Bone marrow macrophages, untreated (media only)
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: none
|
|
Sample_geo_accession | GSM875787
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875787/suppl/GSM875787.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875787/suppl/GSM875787.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875788 | GPL1261 |
|
Media rep3
|
Bone marrow macrophages, untreated (media only)
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: none
|
|
Sample_geo_accession | GSM875788
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875788/suppl/GSM875788.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875788/suppl/GSM875788.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875789 | GPL1261 |
|
IFNa rep1
|
Bone marrow macrophages treated with IFNa (62U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-alpha
|
|
Sample_geo_accession | GSM875789
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875789/suppl/GSM875789.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875789/suppl/GSM875789.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875790 | GPL1261 |
|
IFNa rep2
|
Bone marrow macrophages treated with IFNa (62U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-alpha
|
|
Sample_geo_accession | GSM875790
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875790/suppl/GSM875790.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875790/suppl/GSM875790.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875791 | GPL1261 |
|
IFNa rep3
|
Bone marrow macrophages treated with IFNa (62U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-alpha
|
|
Sample_geo_accession | GSM875791
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875791/suppl/GSM875791.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875791/suppl/GSM875791.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875792 | GPL1261 |
|
IFNg rep1
|
Bone marrow macrophages treated with IFNg (1U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-gamma
|
|
Sample_geo_accession | GSM875792
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875792/suppl/GSM875792.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875792/suppl/GSM875792.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875793 | GPL1261 |
|
IFNg rep2
|
Bone marrow macrophages treated with IFNg (1U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-gamma
|
|
Sample_geo_accession | GSM875793
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875793/suppl/GSM875793.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875793/suppl/GSM875793.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
|
GSM875794 | GPL1261 |
|
IFNg rep3
|
Bone marrow macrophages treated with IFNg (1U/mL) for 2.5hrs
|
strain: C57BL/6J
Sex: female
age: 6 weeks
tissue: bone marrow-derived macrophages
treatment: interferon-gamma
|
|
Sample_geo_accession | GSM875794
| Sample_status | Public on Feb 15 2012
| Sample_submission_date | Feb 14 2012
| Sample_last_update_date | Feb 15 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_treatment_protocol_ch1 | IFNa and IFNg was resuspended in DMEM and added to day 7 BMM in growth media to a final concentration 62U/mL and 1U/mL, respectively. After 2.5 hours, the media was removed and the cells were collected in 1mL of TRIzol (Invitrogen) and further processed for RNA purification.
| Sample_growth_protocol_ch1 | Bone marrow was harvested from the femur of mice and plated in 10cm dishes in Dulbecco's MEM (Gibco), 10%FBS, 1% Penicillin/Streptomycin and ~10ng/mL of M-CSF for 7 days. The media was refreshed on day 4.
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | Cy3
| Sample_label_protocol_ch1 | Cy3 cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | Hybridization was performed according to the manufacturer's instructions.
| Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| Sample_platform_id | GPL1261
| Sample_contact_name | Su-Yang,,Liu
| Sample_contact_laboratory | Genhong Cheng
| Sample_contact_department | Microbiology, Immunology, and Molecular Genetics
| Sample_contact_institute | University of California, Los Angeles
| Sample_contact_address | 615 Charles E. Young Dr. South Rm 246
| Sample_contact_city | Los Angeles
| Sample_contact_state | CA
| Sample_contact_zip/postal_code | 90095
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875794/suppl/GSM875794.CEL.gz
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM875nnn/GSM875794/suppl/GSM875794.CHP.gz
| Sample_series_id | GSE35825
| Sample_data_row_count | 45101
| |
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