Search results for the GEO ID: GSE35844  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM876161 | GPL1261 |
|
YFP-pos GMP Dicer null rep1
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer null
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer null
|
| Sample_geo_accession | GSM876161
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876161/suppl/GSM876161_GMP_1_flfl_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876161/suppl/GSM876161_GMP_1_flfl_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876162 | GPL1261 |
|
YFP-pos GMP Dicer null rep2
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer null
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer null
|
| Sample_geo_accession | GSM876162
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876162/suppl/GSM876162_GMP_2_flfl_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876162/suppl/GSM876162_GMP_2_flfl_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876163 | GPL1261 |
|
YFP-pos GMP Dicer null rep3
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer null
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer null
|
| Sample_geo_accession | GSM876163
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876163/suppl/GSM876163_GMP_3_flfl_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876163/suppl/GSM876163_GMP_3_flfl_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876164 | GPL1261 |
|
YFP-pos GMP Dicer het rep1
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer heterozygous deletion
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer heterozygous deletion
|
| Sample_geo_accession | GSM876164
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876164/suppl/GSM876164_GMP_1_flwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876164/suppl/GSM876164_GMP_1_flwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876165 | GPL1261 |
|
YFP-pos GMP Dicer het rep2
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer heterozygous deletion
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer heterozygous deletion
|
| Sample_geo_accession | GSM876165
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876165/suppl/GSM876165_GMP_2_flwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876165/suppl/GSM876165_GMP_2_flwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876166 | GPL1261 |
|
YFP-pos GMP Dicer het rep3
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer heterozygous deletion
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer heterozygous deletion
|
| Sample_geo_accession | GSM876166
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876166/suppl/GSM876166_GMP_3_flwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876166/suppl/GSM876166_GMP_3_flwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876167 | GPL1261 |
|
YFP-pos GMP Dicer wt rep1
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer wild type
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer wild type
|
| Sample_geo_accession | GSM876167
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876167/suppl/GSM876167_GMP_1_wtwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876167/suppl/GSM876167_GMP_1_wtwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876168 | GPL1261 |
|
YFP-pos GMP Dicer wt rep2
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer wild type
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer wild type
|
| Sample_geo_accession | GSM876168
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876168/suppl/GSM876168_GMP_2_wtwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876168/suppl/GSM876168_GMP_2_wtwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
GSM876169 | GPL1261 |
|
YFP-pos GMP Dicer wt rep3
|
YFP-pos GMPs
|
genetic background: Cebpa-Cre;R26-LSL-Eyfp;Dicer1wt/fl/Dicer1fl/fl (donror), C57BL/6 (recipient)
genotype: Dicer wild type
cell type: YFP-positive granulocyte-macrophage progenitor
|
C57BL/6, Female, bonemarrow, GMPs
Dicer wild type
|
| Sample_geo_accession | GSM876169
| | Sample_status | Public on Jun 18 2012
| | Sample_submission_date | Feb 15 2012
| | Sample_last_update_date | Jun 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | EYFP positive GMPs were sorted into RLT buffer (Qiagen, Venlo, the Netherlands). RNA was extracted with the RNeasy Micro Kit (Qiagen).
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | standard Affymetrix protocol, eukaryotic Target Labeling Assay
| | Sample_hyb_protocol | standard Affymetrix protocol
| | Sample_scan_protocol | standard Affymetrix protocol, Affymetrix 7G
| | Sample_data_processing | Microarray data were normalized with Affymetrix Microarray Suite (MAS 5.0)
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Stefan,J,Erkeland
| | Sample_contact_email | s.erkeland@erasmusmc.nl
| | Sample_contact_phone | +31(0)107043034
| | Sample_contact_fax | +31(0)107044745
| | Sample_contact_laboratory | 1330
| | Sample_contact_department | Hematology
| | Sample_contact_institute | ErasmusMC
| | Sample_contact_address | Dr. Molewaterplein 50
| | Sample_contact_city | Rotterdam
| | Sample_contact_zip/postal_code | 3015GE
| | Sample_contact_country | Netherlands
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876169/suppl/GSM876169_GMP_3_wtwt_20110614.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876169/suppl/GSM876169_GMP_3_wtwt_20110614.CHP.gz
| | Sample_series_id | GSE35844
| | Sample_data_row_count | 45101
| | |
|
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