Search results for the GEO ID: GSE35864 |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM876838 | GPL570 |
|
A1_white_matter_Control
|
brain_white_matter
|
race: White
age: 44
gender: male
phenotype: normal (control)
tissue: White matter
|
1G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876838
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876838/suppl/GSM876838_1G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876839 | GPL570 |
|
A2_white_matter_Control
|
brain_white_matter
|
race: White
age: 53
gender: male
phenotype: normal (control)
tissue: White matter
|
2G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876839
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876839/suppl/GSM876839_2G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876840 | GPL570 |
|
A3_white_matter_Control
|
brain_white_matter
|
race: Hispanic
age: 63
gender: male
phenotype: normal (control)
tissue: White matter
|
3G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876840
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876840/suppl/GSM876840_3G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876841 | GPL570 |
|
A4_white_matter_Control
|
brain_white_matter
|
race: White
age: 58
gender: male
phenotype: normal (control)
tissue: White matter
|
4G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876841
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876841/suppl/GSM876841_4G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876842 | GPL570 |
|
A5_white_matter_Control
|
brain_white_matter
|
race: White
age: 34
gender: male
phenotype: normal (control)
tissue: White matter
|
5G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876842
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876842/suppl/GSM876842_5G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876843 | GPL570 |
|
A6_white_matter_Control
|
brain_white_matter
|
race: White
age: 48
gender: female
phenotype: normal (control)
tissue: White matter
|
6G756.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876843
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876843/suppl/GSM876843_6G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876844 | GPL570 |
|
B1_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 49
gender: male
phenotype: HIV Infected
tissue: White matter
|
7G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876844
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876844/suppl/GSM876844_7G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876845 | GPL570 |
|
B2_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 47
gender: male
phenotype: HIV Infected
tissue: White matter
|
8G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876845
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876845/suppl/GSM876845_8G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876846 | GPL570 |
|
B3_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 44
gender: male
phenotype: HIV Infected
tissue: White matter
|
9G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876846
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876846/suppl/GSM876846_9G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876847 | GPL570 |
|
B4_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 59
gender: male
phenotype: HIV Infected
tissue: White matter
|
10G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876847
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876847/suppl/GSM876847_10G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876848 | GPL570 |
|
B5_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 60
gender: male
phenotype: HIV Infected
tissue: White matter
|
11G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876848
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876848/suppl/GSM876848_11G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876849 | GPL570 |
|
B6_white_matter_HIV infected
|
brain_white_matter
|
race: White
age: 39
gender: male
phenotype: HIV Infected
tissue: White matter
|
12G756.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876849
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Nov 19 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | Partek
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876849/suppl/GSM876849_12G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876850 | GPL570 |
|
C1_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: Black
age: 33
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
13G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876850
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876850/suppl/GSM876850_13G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876851 | GPL570 |
|
C2_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: White
age: 35
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
14G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876851
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876851/suppl/GSM876851_14G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876852 | GPL570 |
|
C3_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: White
age: 57
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
15G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876852
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876852/suppl/GSM876852_15G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876853 | GPL570 |
|
C4_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: Hispanic
age: 36
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
16G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876853
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876853/suppl/GSM876853_16G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876854 | GPL570 |
|
C5_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: White
age: 52
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
17G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876854
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876854/suppl/GSM876854_17G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876855 | GPL570 |
|
C6_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
18G756.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876855
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876855/suppl/GSM876855_18G756.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876856 | GPL570 |
|
C7_white_matter_HIV infected_w/HAD_w/o HIVE
|
brain_white_matter
|
race: White
age: 52
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: White matter
|
19G757.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876856
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876856/suppl/GSM876856_19G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876857 | GPL570 |
|
D1_white_matter_HIV infected_w/HAD_w/ HIVE
|
brain_white_matter
|
race: White
age: 48
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: White matter
|
20G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876857
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876857/suppl/GSM876857_20G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876858 | GPL570 |
|
D2_white_matter_HIV infected_w/HAD_w/ HIVE
|
brain_white_matter
|
race: White
age: 32
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: White matter
|
21G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876858
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876858/suppl/GSM876858_21G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876859 | GPL570 |
|
D3_white_matter_HIV infected_w/HAD_w/ HIVE
|
brain_white_matter
|
race: White
age: 39
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: White matter
|
22G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876859
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876859/suppl/GSM876859_22G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876860 | GPL570 |
|
D4_white_matter_HIV infected_w/HAD_w/ HIVE
|
brain_white_matter
|
race: White
age: 55
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: White matter
|
23G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876860
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876860/suppl/GSM876860_23G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876861 | GPL570 |
|
D5_white_matter_HIV infected_w/HAD_w/ HIVE
|
brain_white_matter
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: White matter
|
24G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876861
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876861/suppl/GSM876861_24G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876862 | GPL570 |
|
A1_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: White
age: 44
gender: male
phenotype: normal (control)
tissue: Frontal cortex
|
25G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876862
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876862/suppl/GSM876862_25G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876863 | GPL570 |
|
A2_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: White
age: 53
gender: male
phenotype: normal (control)
tissue: Frontal cortex
|
26G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876863
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876863/suppl/GSM876863_26G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876864 | GPL570 |
|
A3_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: Hispanic
age: 63
gender: male
phenotype: normal (control)
tissue: Frontal cortex
|
27G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876864
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876864/suppl/GSM876864_27G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876865 | GPL570 |
|
A4_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: White
age: 58
gender: male
phenotype: normal (control)
tissue: Frontal cortex
|
28G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876865
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876865/suppl/GSM876865_28G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876866 | GPL570 |
|
A5_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: White
age: 34
gender: male
phenotype: normal (control)
tissue: Frontal cortex
|
29G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876866
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876866/suppl/GSM876866_29G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876867 | GPL570 |
|
A6_Frontal_Cortex_Control
|
brain_frontal_cortex
|
race: White
age: 48
gender: female
phenotype: normal (control)
tissue: Frontal cortex
|
30G758.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876867
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876867/suppl/GSM876867_30G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876868 | GPL570 |
|
B1_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 49
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
31G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876868
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876868/suppl/GSM876868_31G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876869 | GPL570 |
|
B2_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 47
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
32G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876869
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876869/suppl/GSM876869_32G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876870 | GPL570 |
|
B3_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 44
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
33G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876870
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876870/suppl/GSM876870_33G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876871 | GPL570 |
|
B4_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 59
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
34G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876871
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876871/suppl/GSM876871_34G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876872 | GPL570 |
|
B5_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 60
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
35G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876872
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876872/suppl/GSM876872_35G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876873 | GPL570 |
|
B6_Frontal_Cortex_HIV infected
|
brain_frontal_cortex
|
race: White
age: 39
gender: male
phenotype: HIV Infected
tissue: Frontal cortex
|
36G758.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876873
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Nov 19 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876873/suppl/GSM876873_36G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876874 | GPL570 |
|
C1_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: Black
age: 33
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
37G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876874
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876874/suppl/GSM876874_37G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876875 | GPL570 |
|
C2_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: White
age: 35
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
38G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876875
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876875/suppl/GSM876875_38G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876876 | GPL570 |
|
C3_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: White
age: 57
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
39G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876876
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876876/suppl/GSM876876_39G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876877 | GPL570 |
|
C4_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: Hispanic
age: 36
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
40G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876877
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876877/suppl/GSM876877_40G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876878 | GPL570 |
|
C5_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: White
age: 52
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
41G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876878
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876878/suppl/GSM876878_41G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876879 | GPL570 |
|
C6_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
42G758.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876879
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876879/suppl/GSM876879_42G758.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876880 | GPL570 |
|
C7_Frontal_Cortex_HIV infected_w/HAD_w/o HIVE
|
brain_frontal_cortex
|
race: White
age: 52
gender: male
phenotype: HIV Infected with neurocognitive impairment (HAD: HIV-associated dementia)
tissue: Frontal cortex
|
43G757.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876880
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876880/suppl/GSM876880_43G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876881 | GPL570 |
|
D1_Frontal_Cortex_HIV infected_w/HAD_w/ HIVE
|
brain_frontal_cortex
|
race: White
age: 48
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: Frontal cortex
|
44G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876881
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876881/suppl/GSM876881_44G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876882 | GPL570 |
|
D2_Frontal_Cortex_HIV infected_w/HAD_w/ HIVE
|
brain_frontal_cortex
|
race: White
age: 32
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: Frontal cortex
|
45G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876882
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876882/suppl/GSM876882_45G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876883 | GPL570 |
|
D3_Frontal_Cortex_HIV infected_w/HAD_w/ HIVE
|
brain_frontal_cortex
|
race: White
age: 39
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: Frontal cortex
|
46G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876883
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876883/suppl/GSM876883_46G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876884 | GPL570 |
|
D4_Frontal_Cortex_HIV infected_w/HAD_w/ HIVE
|
brain_frontal_cortex
|
race: White
age: 55
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: Frontal cortex
|
47G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876884
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876884/suppl/GSM876884_47G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876885 | GPL570 |
|
D5_Frontal_Cortex_HIV infected_w/HAD_w/ HIVE
|
brain_frontal_cortex
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with HAD and HIV encephalitis (HIVE)
tissue: Frontal cortex
|
48G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876885
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876885/suppl/GSM876885_48G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876886 | GPL570 |
|
A1_basal_ganglia_Control
|
brain_basal_ganglia
|
race: White
age: 44
gender: male
phenotype: normal (control)
tissue: Basal ganglia
|
49G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876886
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876886/suppl/GSM876886_49G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876887 | GPL570 |
|
A2_basal_ganglia_Control
|
brain_basal_ganglia
|
race: White
age: 53
gender: male
phenotype: normal (control)
tissue: Basal ganglia
|
50G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876887
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876887/suppl/GSM876887_50G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876888 | GPL570 |
|
A3_basal_ganglia_Control
|
brain_basal_ganglia
|
race: Hispanic
age: 63
gender: male
phenotype: normal (control)
tissue: Basal ganglia
|
51G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876888
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876888/suppl/GSM876888_51G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876889 | GPL570 |
|
A4_basal_ganglia_Control
|
brain_basal_ganglia
|
race: White
age: 58
gender: male
phenotype: normal (control)
tissue: Basal ganglia
|
52G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876889
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876889/suppl/GSM876889_52G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876890 | GPL570 |
|
A5_basal_ganglia_Control
|
brain_basal_ganglia
|
race: White
age: 34
gender: male
phenotype: normal (control)
tissue: Basal ganglia
|
53G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876890
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876890/suppl/GSM876890_53G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876891 | GPL570 |
|
A6_basal_ganglia_Control
|
brain_basal_ganglia
|
race: White
age: 48
gender: female
phenotype: normal (control)
tissue: Basal ganglia
|
54G759.CEL
Gene expression data from the white matter of control human brain
|
Sample_geo_accession | GSM876891
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876891/suppl/GSM876891_54G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876892 | GPL570 |
|
B1_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 49
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
55G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876892
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876892/suppl/GSM876892_55G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876893 | GPL570 |
|
B2_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 47
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
56G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876893
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876893/suppl/GSM876893_56G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876894 | GPL570 |
|
B3_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 44
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
57G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876894
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876894/suppl/GSM876894_57G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876895 | GPL570 |
|
B4_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 59
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
58G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876895
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876895/suppl/GSM876895_58G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876896 | GPL570 |
|
B5_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 60
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
59G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876896
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876896/suppl/GSM876896_59G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876897 | GPL570 |
|
B6_basal_ganglia_HIV infected
|
brain_basal_ganglia
|
race: White
age: 39
gender: male
phenotype: HIV Infected
tissue: Basal ganglia
|
60G759.CEL
Gene expression data from the white matter of HIV infected human brain
|
Sample_geo_accession | GSM876897
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Nov 19 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876897/suppl/GSM876897_60G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876898 | GPL570 |
|
C1_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: Black
age: 33
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
61G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876898
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876898/suppl/GSM876898_61G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876899 | GPL570 |
|
C2_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: White
age: 35
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
62G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876899
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876899/suppl/GSM876899_62G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876900 | GPL570 |
|
C3_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: White
age: 57
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
63G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876900
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876900/suppl/GSM876900_63G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876901 | GPL570 |
|
C4_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: Hispanic
age: 36
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
64G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876901
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876901/suppl/GSM876901_64G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876902 | GPL570 |
|
C5_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: White
age: 52
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
65G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876902
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876902/suppl/GSM876902_65G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876903 | GPL570 |
|
C6_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
66G759.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876903
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876903/suppl/GSM876903_66G759.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876904 | GPL570 |
|
C7_basal_ganglia_HIV infected_w/HAD_w/o HIVE
|
brain_basal_ganglia
|
race: White
age: 52
gender: male
phenotype: HIV Infected with HAD
tissue: Basal ganglia
|
67G757.CEL
Gene expression data from the white matter of HIV infected HAD human brain
|
Sample_geo_accession | GSM876904
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876904/suppl/GSM876904_67G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876905 | GPL570 |
|
D1_basal_ganglia_HIV infected_w/HAD_w/ HIVE
|
brain_basal_ganglia
|
race: White
age: 48
gender: male
phenotype: HIV Infected with HAD and encephalitis
tissue: Basal ganglia
|
68G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876905
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876905/suppl/GSM876905_68G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876906 | GPL570 |
|
D2_basal_ganglia_HIV infected_w/HAD_w/ HIVE
|
brain_basal_ganglia
|
race: White
age: 32
gender: male
phenotype: HIV Infected with HAD and encephalitis
tissue: Basal ganglia
|
69G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876906
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876906/suppl/GSM876906_69G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876907 | GPL570 |
|
D3_basal_ganglia_HIV infected_w/HAD_w/ HIVE
|
brain_basal_ganglia
|
race: White
age: 39
gender: male
phenotype: HIV Infected with HAD and encephalitis
tissue: Basal ganglia
|
70G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876907
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876907/suppl/GSM876907_70G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876908 | GPL570 |
|
D4_basal_ganglia_HIV infected_w/HAD_w/ HIVE
|
brain_basal_ganglia
|
race: White
age: 55
gender: male
phenotype: HIV Infected with HAD and encephalitis
tissue: Basal ganglia
|
71G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876908
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876908/suppl/GSM876908_71G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
GSM876909 | GPL570 |
|
D5_basal_ganglia_HIV infected_w/HAD_w/ HIVE
|
brain_basal_ganglia
|
race: Hispanic
age: 41
gender: male
phenotype: HIV Infected with HAD and encephalitis
tissue: Basal ganglia
|
72G757.CEL
Gene expression data from the white matter of HIV infected HAD and HIVE human brain
|
Sample_geo_accession | GSM876909
| Sample_status | Public on Aug 01 2012
| Sample_submission_date | Feb 16 2012
| Sample_last_update_date | Aug 01 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| Sample_hyb_protocol | After fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45oC on Human U133 2.0 plus GeneChips were washed and stained.
| Sample_scan_protocol | GeneChips were scanned using the GeneChip® Scanner 3000 7G.
| Sample_data_processing | The data were analyzed with Affy package for R programming.
| Sample_platform_id | GPL570
| Sample_contact_name | Jessica,,Winkler
| Sample_contact_email | jwinkle@unmc.edu
| Sample_contact_laboratory | Howard Fox
| Sample_contact_department | Pharmacology and Experimental Neuroscience
| Sample_contact_institute | University of Nebraska Medical Center
| Sample_contact_address | 985800 Nebraska Medical Center- DRC I
| Sample_contact_city | Omaha
| Sample_contact_zip/postal_code | 68198
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM876nnn/GSM876909/suppl/GSM876909_72G757.CEL.gz
| Sample_series_id | GSE35864
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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