Search results for the GEO ID: GSE35979  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM878544 | GPL1261 |
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TG mouse lung, biological rep1
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TG mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: CC10-rtTA-IL13 transgenic (TG)
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878544
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878544/suppl/GSM878544.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
| | |
|
GSM878545 | GPL1261 |
|
TG mouse lung, biological rep2
|
TG mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: CC10-rtTA-IL13 transgenic (TG)
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878545
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878545/suppl/GSM878545.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
| | |
|
GSM878546 | GPL1261 |
|
WT mouse lung, biological rep1
|
WT mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: wildtype
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878546
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878546/suppl/GSM878546.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
| | |
|
GSM878547 | GPL1261 |
|
WT mouse lung, biological rep2
|
WT mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: wildtype
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878547
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878547/suppl/GSM878547.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
| | |
|
GSM878548 | GPL1261 |
|
WT mouse lung, biological rep3
|
WT mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: wildtype
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878548
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878548/suppl/GSM878548.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
| | |
|
GSM878549 | GPL1261 |
|
WT mouse lung, biological rep4
|
WT mouse lung
|
tissue: mouse lung upper left lobe
strain: C57BL/6
genotype/variation: wildtype
age: 6-10 weeks old mouse
|
Gene expression data from mouse lung upper left lobe
|
| Sample_geo_accession | GSM878549
| | Sample_status | Public on Feb 23 2012
| | Sample_submission_date | Feb 21 2012
| | Sample_last_update_date | Feb 23 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Mice were given doxycycline-treated (final concentration 2 mg/mL) water for 7 days. After 7 days, mice were euthanized and the left upper lobes of the lungs were removed for RNA extraction.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained according to standard Affymetrix protocol.
| | Sample_scan_protocol | GeneChips were scanned according to standard protocol.
| | Sample_data_processing | The data was analyzed using Matlab R2011b with Bioinformatics Toolbox to read in Affymetrix microarray data and normalize the data using Robust Multi-array Average procedure. Filter to remove probes yielding maximum intensity levels below 100 was applied.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Aik,T,Ooi
| | Sample_contact_department | Pediatrics
| | Sample_contact_institute | UCLA
| | Sample_contact_address | 650 Charles E Young Dr S, Factor 9-240
| | Sample_contact_city | Los Angeles
| | Sample_contact_zip/postal_code | CA
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM878nnn/GSM878549/suppl/GSM878549.CEL.gz
| | Sample_series_id | GSE35979
| | Sample_series_id | GSE37085
| | Sample_data_row_count | 45037
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