Search results for the GEO ID: GSE36000  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM879118 | GPL570 |
|
MCL_IGHV_UNMUT (R1394)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1394_U.CEL
|
| Sample_geo_accession | GSM879118
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879118/suppl/GSM879118.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879119 | GPL570 |
|
MCL_IGHV_UNMUT (R1328)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1328_U.CEL
|
| Sample_geo_accession | GSM879119
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879119/suppl/GSM879119.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879120 | GPL570 |
|
MCL_IGHV_UNMUT (R1329)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1329_U.CEL
|
| Sample_geo_accession | GSM879120
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879120/suppl/GSM879120.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879121 | GPL570 |
|
MCL_IGHV_UNMUT (R1306)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1306_U.CEL
|
| Sample_geo_accession | GSM879121
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879121/suppl/GSM879121.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879122 | GPL570 |
|
MCL_IGHV_UNMUT (R1332)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1332_U.CEL
|
| Sample_geo_accession | GSM879122
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879122/suppl/GSM879122.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879123 | GPL570 |
|
MCL_IGHV_MUT (R1399_M)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1399_M.CEL
|
| Sample_geo_accession | GSM879123
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879123/suppl/GSM879123.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879124 | GPL570 |
|
MCL_IGHV_MUT (R1400)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1400_M.CEL
|
| Sample_geo_accession | GSM879124
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879124/suppl/GSM879124.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879125 | GPL570 |
|
MCL_IGHV_UNMUT (R1587)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1587_U.CEL
|
| Sample_geo_accession | GSM879125
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879125/suppl/GSM879125.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879126 | GPL570 |
|
MCL_IGHV_UNMUT (R1680)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1680_U.CEL
|
| Sample_geo_accession | GSM879126
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879126/suppl/GSM879126.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879127 | GPL570 |
|
MCL_IGHV_UNMUT (268-01-5TR)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
268-01-5TR_U.CEL
|
| Sample_geo_accession | GSM879127
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879127/suppl/GSM879127.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879128 | GPL570 |
|
MCL_IGHV_MUT (269-01-5TR)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
269-01-5TR_M.CEL
|
| Sample_geo_accession | GSM879128
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879128/suppl/GSM879128.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879129 | GPL570 |
|
MCL_IGHV_UNMUT (043-01-4TR)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
043-01-4TR_U.CEL
|
| Sample_geo_accession | GSM879129
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879129/suppl/GSM879129.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879130 | GPL570 |
|
MCL_IGHV_MUT (R1302)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1302_M.CEL
|
| Sample_geo_accession | GSM879130
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879130/suppl/GSM879130.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879131 | GPL570 |
|
MCL_IGHV_MUT (R1304)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1304_M.CEL
|
| Sample_geo_accession | GSM879131
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879131/suppl/GSM879131.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879132 | GPL570 |
|
MCL_IGHV_MUT (R1305)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1305_M.CEL
|
| Sample_geo_accession | GSM879132
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879132/suppl/GSM879132.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879133 | GPL570 |
|
MCL_IGHV_MUT (R1628)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1628_M.CEL
|
| Sample_geo_accession | GSM879133
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879133/suppl/GSM879133.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879134 | GPL570 |
|
MCL_IGHV_MUT (R1629)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1629_M.CEL
|
| Sample_geo_accession | GSM879134
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879134/suppl/GSM879134.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879135 | GPL570 |
|
MCL_IGHV_MUT (R1341)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1341_M.CEL
|
| Sample_geo_accession | GSM879135
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879135/suppl/GSM879135.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879136 | GPL570 |
|
MCL_IGHV_MUT (R1333)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1333_M.CEL
|
| Sample_geo_accession | GSM879136
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879136/suppl/GSM879136.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879137 | GPL570 |
|
MCL_IGHV_MUT (R1585)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1585_M.CEL
|
| Sample_geo_accession | GSM879137
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879137/suppl/GSM879137.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879138 | GPL570 |
|
MCL_IGHV_MUT (R1589)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1589_M.CEL
|
| Sample_geo_accession | GSM879138
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879138/suppl/GSM879138.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879139 | GPL570 |
|
MCL_IGHV_MUT (R1591)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1591_M.CEL
|
| Sample_geo_accession | GSM879139
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879139/suppl/GSM879139.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879140 | GPL570 |
|
MCL_IGHV_UNMUT (R1595)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1595_U.CEL
|
| Sample_geo_accession | GSM879140
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879140/suppl/GSM879140.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879141 | GPL570 |
|
MCL_IGHV_MUT (R1640)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1640_M.CEL
|
| Sample_geo_accession | GSM879141
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879141/suppl/GSM879141.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879142 | GPL570 |
|
MCL_IGHV_MUT (R1626)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1626_M.CEL
|
| Sample_geo_accession | GSM879142
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879142/suppl/GSM879142.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879143 | GPL570 |
|
MCL_IGHV_MUT (R1610)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1610_M.CEL
|
| Sample_geo_accession | GSM879143
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879143/suppl/GSM879143.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879144 | GPL570 |
|
MCL_IGHV_MUT (02_201)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
02_201_M.CEL
|
| Sample_geo_accession | GSM879144
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879144/suppl/GSM879144.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879145 | GPL570 |
|
MCL_IGHV_MUT (R1339)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1339_M.CEL
|
| Sample_geo_accession | GSM879145
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879145/suppl/GSM879145.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879146 | GPL570 |
|
MCL_IGHV_MUT (R1301)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1301_M.CEL
|
| Sample_geo_accession | GSM879146
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879146/suppl/GSM879146.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879147 | GPL570 |
|
MCL_IGHV_UNMUT (R1338)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1338_U.CEL
|
| Sample_geo_accession | GSM879147
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879147/suppl/GSM879147.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879148 | GPL570 |
|
MCL_IGHV_UNMUT (R1762)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1762_U.CEL
|
| Sample_geo_accession | GSM879148
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879148/suppl/GSM879148.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879149 | GPL570 |
|
MCL_IGHV_MUT (R1938)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1938_M.CEL
|
| Sample_geo_accession | GSM879149
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879149/suppl/GSM879149.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879150 | GPL570 |
|
MCL_IGHV_MUT (R1940)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1940_M.CEL
|
| Sample_geo_accession | GSM879150
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879150/suppl/GSM879150.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879151 | GPL570 |
|
MCL_IGHV_MUT (R1942)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1942_M.CEL
|
| Sample_geo_accession | GSM879151
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879151/suppl/GSM879151.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879152 | GPL570 |
|
MCL_IGHV_MUT (R1941)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1941_M.CEL
|
| Sample_geo_accession | GSM879152
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879152/suppl/GSM879152.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879153 | GPL570 |
|
MCL_IGHV_MUT (R1970)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: MUT
|
R1970_M.CEL
|
| Sample_geo_accession | GSM879153
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879153/suppl/GSM879153.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
| | |
|
GSM879154 | GPL570 |
|
MCL_IGHV_UNMUT (R1897)
|
B cell lymphocytes from MCL patient
|
disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
|
R1897_U.CEL
|
| Sample_geo_accession | GSM879154
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879154/suppl/GSM879154.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
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GSM879155 | GPL570 |
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MCL_IGHV_UNMUT (R1388)
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B cell lymphocytes from MCL patient
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disease state: Mantle Cell Lymphoma
cell type: B cell lymphocyte
ighv status: UNMUT
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R1388_U.CEL
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| Sample_geo_accession | GSM879155
| | Sample_status | Public on Jun 25 2013
| | Sample_submission_date | Feb 22 2012
| | Sample_last_update_date | Jun 25 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from mononuclear cell preparations of leukemic B cells obtained fromp peripheral blood prior to treatment using TRIZOL. RNA quality and quantity was assessed using the bionalyzer 2100 and nanodrop spectrophotometer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol using the 3' IVT Express kit from Affymetrix
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HU133plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | The data were analyzed with the Expression Console applilcation from Affymetrix. We performed RMA to summarize the data.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Pedro,,Jares
| | Sample_contact_email | pjares@clinic.ub.es
| | Sample_contact_department | Genomics Unit
| | Sample_contact_institute | IDIBAPS
| | Sample_contact_address | c/ Villarroel 170
| | Sample_contact_city | Barcelona
| | Sample_contact_state | Barcelona
| | Sample_contact_zip/postal_code | 08036
| | Sample_contact_country | Spain
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM879nnn/GSM879155/suppl/GSM879155.CEL.gz
| | Sample_series_id | GSE36000
| | Sample_data_row_count | 54675
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