Search results for the GEO ID: GSE36068 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM880683 | GPL1261 |
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slc6a4_bs_ip1
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Trap'd serotonin neuron RNA, biological replicate 1
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Trap'd serotonin neuron RNA
strain: mixed FVB and c57/bl6j background
|
Trap'd serotonin neuron RNA, biological replicate 1
|
Sample_geo_accession | GSM880683
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880683/suppl/GSM880683.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
|
GSM880684 | GPL1261 |
|
slc6a4_bs_ip2
|
Trap'd serotonin neuron RNA, biological replicate 2
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Trap'd serotonin neuron RNA
strain: mixed FVB and c57/bl6j background
|
Trap'd serotonin neuron RNA, biological replicate 2
|
Sample_geo_accession | GSM880684
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880684/suppl/GSM880684.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
|
GSM880685 | GPL1261 |
|
slc6a4_bs_ip3
|
Trap'd serotonin neuron RNA, biological replicate 3
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Trap'd serotonin neuron RNA
strain: mixed FVB and c57/bl6j background
|
Trap'd serotonin neuron RNA, biological replicate 3
|
Sample_geo_accession | GSM880685
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880685/suppl/GSM880685.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
|
GSM880686 | GPL1261 |
|
slc6a4_bs_ub1
|
Total tissue RNA (unbound) from Replicate 1
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Total tissue RNA (unbound)
strain: mixed FVB and c57/bl6j background
|
Total tissue RNA (unbound) from Replicate 1
|
Sample_geo_accession | GSM880686
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880686/suppl/GSM880686.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
|
GSM880687 | GPL1261 |
|
slc6a4_bs_ub2
|
Total tissue RNA (unbound) from Replicate 2
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Total tissue RNA (unbound)
strain: mixed FVB and c57/bl6j background
|
Total tissue RNA (unbound) from Replicate 2
|
Sample_geo_accession | GSM880687
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880687/suppl/GSM880687.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
|
GSM880688 | GPL1261 |
|
slc6a4_bs_ub3
|
Total tissue RNA (unbound) from Replicate 3
|
tissue: Dissected midbrain and brainstem (removed cerebellum, and took all tissue posterior to the pontine/hypothalamic junction, including superior colliculi to foramen magnum)
age: adult(6-12 weeks)
line: slc6a4 JD60
genotype: Slc6a4 JD60
number of mice: 5
gender: males and females
sample type: Total tissue RNA (unbound)
strain: mixed FVB and c57/bl6j background
|
Total tissue RNA (unbound) from Replicate 3
|
Sample_geo_accession | GSM880688
| Sample_status | Public on Dec 31 2012
| Sample_submission_date | Feb 24 2012
| Sample_last_update_date | Dec 31 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Mus musculus
| Sample_taxid_ch1 | 10090
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | TRAP affinity purification of ribosomes from BAC transgenic mice(see PMID:19013282), followed by Trizol extraction, DNAse treatment, and RNeasy-Minelute Cleanup
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | Affymetrix two cycle amplification kit, starting with 20 ng of total RNA.
| Sample_hyb_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_scan_protocol | Standard Affymetrix protocol for mouse 430 2.0 platform
| Sample_data_processing | GCRMA normalization within biological replicate groups. Performed with R / Bioconductor.
| Sample_platform_id | GPL1261
| Sample_contact_name | Joseph,D,Dougherty
| Sample_contact_department | Genetics and Psychiatry
| Sample_contact_institute | Washington University
| Sample_contact_address | 4566 Scott Ave, box 8232
| Sample_contact_city | St Louis
| Sample_contact_state | Missouri
| Sample_contact_zip/postal_code | 63110
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880688/suppl/GSM880688.CEL.gz
| Sample_series_id | GSE36068
| Sample_data_row_count | 45101
| |
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