Search results for the GEO ID: GSE36091  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM880969 | GPL1261 |
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VhlF/F
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Colon
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strain: 129S6/SvEv
age: 5 weeks old
genotype/variation: VhlF/F (Vhl-floxed)
tissue: Colon
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Gene expression data from colons.
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| Sample_geo_accession | GSM880969
| | Sample_status | Public on Mar 07 2012
| | Sample_submission_date | Feb 27 2012
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Colon mucosal scrapings were got from 5 weeks old mice
| | Sample_growth_protocol_ch1 | All mice were 129S6/SvEv background and maintained in standard cages in a light and temperature-controlled room and were allowed standard chow and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the Ambion Premier kit protocol from 250 ng total RNA (MessageAmp Premier RNA Amplification Kit Instruction Manual, 2008, Ambion).
| | Sample_hyb_protocol | Following fragmentation, 16 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 7G GeneChip Scanner with Autoloader.
| | Sample_data_processing | Data was analyzed using the affy Bioconductor packages implemented in the R-statistical environment. RMA was used to normalize the data and fit log2 transformed expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | XIANG,,XUE
| | Sample_contact_email | xxue@umich.edu
| | Sample_contact_phone | 7346155041
| | Sample_contact_institute | Umich
| | Sample_contact_address | 1301 E. Catherine Street
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | Michigan
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880969/suppl/GSM880969_Shah_001_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE36091
| | Sample_data_row_count | 45101
| | |
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GSM880970 | GPL1261 |
|
VhlΔIE
|
Colon
|
strain: 129S6/SvEv
age: 5 weeks old
genotype/variation: VhlΔIE (intestine-specific Vhl-knockout)
tissue: Colon
|
Gene expression data from colons.
|
| Sample_geo_accession | GSM880970
| | Sample_status | Public on Mar 07 2012
| | Sample_submission_date | Feb 27 2012
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Colon mucosal scrapings were got from 5 weeks old mice
| | Sample_growth_protocol_ch1 | All mice were 129S6/SvEv background and maintained in standard cages in a light and temperature-controlled room and were allowed standard chow and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the Ambion Premier kit protocol from 250 ng total RNA (MessageAmp Premier RNA Amplification Kit Instruction Manual, 2008, Ambion).
| | Sample_hyb_protocol | Following fragmentation, 16 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 7G GeneChip Scanner with Autoloader.
| | Sample_data_processing | Data was analyzed using the affy Bioconductor packages implemented in the R-statistical environment. RMA was used to normalize the data and fit log2 transformed expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | XIANG,,XUE
| | Sample_contact_email | xxue@umich.edu
| | Sample_contact_phone | 7346155041
| | Sample_contact_institute | Umich
| | Sample_contact_address | 1301 E. Catherine Street
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | Michigan
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880970/suppl/GSM880970_Shah_002_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE36091
| | Sample_data_row_count | 45101
| | |
|
GSM880971 | GPL1261 |
|
VhlF/F/Apcmin/+
|
Colon
|
strain: 129S6/SvEv
age: 5 weeks old
genotype/variation: VhlF/F/Apcmin/+ (Vhl-floxed, intestinal tumor model)
tissue: Colon
|
Gene expression data from colons.
|
| Sample_geo_accession | GSM880971
| | Sample_status | Public on Mar 07 2012
| | Sample_submission_date | Feb 27 2012
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Colon mucosal scrapings were got from 5 weeks old mice
| | Sample_growth_protocol_ch1 | All mice were 129S6/SvEv background and maintained in standard cages in a light and temperature-controlled room and were allowed standard chow and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the Ambion Premier kit protocol from 250 ng total RNA (MessageAmp Premier RNA Amplification Kit Instruction Manual, 2008, Ambion).
| | Sample_hyb_protocol | Following fragmentation, 16 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 7G GeneChip Scanner with Autoloader.
| | Sample_data_processing | Data was analyzed using the affy Bioconductor packages implemented in the R-statistical environment. RMA was used to normalize the data and fit log2 transformed expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | XIANG,,XUE
| | Sample_contact_email | xxue@umich.edu
| | Sample_contact_phone | 7346155041
| | Sample_contact_institute | Umich
| | Sample_contact_address | 1301 E. Catherine Street
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | Michigan
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880971/suppl/GSM880971_Shah_003_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE36091
| | Sample_data_row_count | 45101
| | |
|
GSM880972 | GPL1261 |
|
VhlΔIE/Apcmin/+
|
Colon
|
strain: 129S6/SvEv
age: 5 weeks old
genotype/variation: VhlΔIE/Apcmin/+ (intestine-specific Vhl-knockout, intestinal tumor model)
tissue: Colon
|
Gene expression data from colons.
|
| Sample_geo_accession | GSM880972
| | Sample_status | Public on Mar 07 2012
| | Sample_submission_date | Feb 27 2012
| | Sample_last_update_date | Mar 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Colon mucosal scrapings were got from 5 weeks old mice
| | Sample_growth_protocol_ch1 | All mice were 129S6/SvEv background and maintained in standard cages in a light and temperature-controlled room and were allowed standard chow and water ad libitum.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated aRNA were prepared according to the Ambion Premier kit protocol from 250 ng total RNA (MessageAmp Premier RNA Amplification Kit Instruction Manual, 2008, Ambion).
| | Sample_hyb_protocol | Following fragmentation, 16 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix 3000 7G GeneChip Scanner with Autoloader.
| | Sample_data_processing | Data was analyzed using the affy Bioconductor packages implemented in the R-statistical environment. RMA was used to normalize the data and fit log2 transformed expression values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | XIANG,,XUE
| | Sample_contact_email | xxue@umich.edu
| | Sample_contact_phone | 7346155041
| | Sample_contact_institute | Umich
| | Sample_contact_address | 1301 E. Catherine Street
| | Sample_contact_city | Ann Arbor
| | Sample_contact_state | Michigan
| | Sample_contact_zip/postal_code | 48109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM880nnn/GSM880972/suppl/GSM880972_Shah_004_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE36091
| | Sample_data_row_count | 45101
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