Search results for the GEO ID: GSE36245 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM884997 | GPL570 |
|
GBM_11-013
|
Primary brain tumor tissue
|
age at diagnosis (years): 10
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: ventricular
subgroup: K27
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM884997
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM884nnn/GSM884997/suppl/GSM884997.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM884998 | GPL570 |
|
GBM_11-014
|
Primary brain tumor tissue
|
age at diagnosis (years): 10
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: frontal lobe
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM884998
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM884nnn/GSM884998/suppl/GSM884998.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM884999 | GPL570 |
|
GBM_11-017
|
Primary brain tumor tissue
|
age at diagnosis (years): 9
gender: male
h3f3a status: G34R
idh1 status: WT
tumor location: temporal lobe
subgroup: G34
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM884999
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM884nnn/GSM884999/suppl/GSM884999.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885000 | GPL570 |
|
GBM_11-026
|
Primary brain tumor tissue
|
age at diagnosis (years): 11
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: thalamic
subgroup: K27
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885000
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885000/suppl/GSM885000.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885001 | GPL570 |
|
GBM_11-031
|
Primary brain tumor tissue
|
age at diagnosis (years): 13
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: frontal lobe
subgroup: Mesenchymal
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885001
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885001/suppl/GSM885001.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885002 | GPL570 |
|
GBM_11-038
|
Primary brain tumor tissue
|
age at diagnosis (years): 38
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: RTK II
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885002
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885002/suppl/GSM885002.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885003 | GPL570 |
|
GBM_11-039
|
Primary brain tumor tissue
|
age at diagnosis (years): 40
gender: female
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885003
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885003/suppl/GSM885003.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885004 | GPL570 |
|
GBM_11-040
|
Primary brain tumor tissue
|
age at diagnosis (years): 32
gender: female
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885004
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885004/suppl/GSM885004.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885005 | GPL570 |
|
GBM_11-041
|
Primary brain tumor tissue
|
age at diagnosis (years): 46
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: Mesenchymal
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885005
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885005/suppl/GSM885005.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885006 | GPL570 |
|
GBM_11-042
|
Primary brain tumor tissue
|
age at diagnosis (years): 34
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: Mesenchymal
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885006
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885006/suppl/GSM885006.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885007 | GPL570 |
|
GBM_11-043
|
Primary brain tumor tissue
|
age at diagnosis (years): 20
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: frontal/temporal
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885007
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885007/suppl/GSM885007.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885008 | GPL570 |
|
GBM_11-044
|
Primary brain tumor tissue
|
age at diagnosis (years): 36
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885008
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885008/suppl/GSM885008.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885009 | GPL570 |
|
GBM_11-045
|
Primary brain tumor tissue
|
age at diagnosis (years): 19
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: parietal lobe
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885009
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885009/suppl/GSM885009.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885010 | GPL570 |
|
GBM_11-047
|
Primary brain tumor tissue
|
age at diagnosis (years): 36
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: Mesenchymal
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885010
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885010/suppl/GSM885010.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885011 | GPL570 |
|
GBM_11-048
|
Primary brain tumor tissue
|
age at diagnosis (years): 23
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: thalamic
subgroup: K27
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885011
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885011/suppl/GSM885011.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885012 | GPL570 |
|
GBM_11-049
|
Primary brain tumor tissue
|
age at diagnosis (years): 33
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885012
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885012/suppl/GSM885012.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885013 | GPL570 |
|
GBM_11-050
|
Primary brain tumor tissue
|
age at diagnosis (years): 20
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: cerebellar
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885013
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885013/suppl/GSM885013.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885014 | GPL570 |
|
GBM_11-051
|
Primary brain tumor tissue
|
age at diagnosis (years): 38
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: Mesenchymal
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885014
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885014/suppl/GSM885014.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885015 | GPL570 |
|
GBM_11-052
|
Primary brain tumor tissue
|
age at diagnosis (years): 48
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885015
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885015/suppl/GSM885015.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885016 | GPL570 |
|
GBM_11-053
|
Primary brain tumor tissue
|
age at diagnosis (years): 42
gender: female
h3f3a status: G34R
idh1 status: WT
tumor location: temporal lobe
subgroup: G34
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885016
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885016/suppl/GSM885016.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885017 | GPL570 |
|
GBM_11-054
|
Primary brain tumor tissue
|
age at diagnosis (years): 33
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: RTK I
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885017
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885017/suppl/GSM885017.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885018 | GPL570 |
|
GBM_11-055
|
Primary brain tumor tissue
|
age at diagnosis (years): 40
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: RTK II
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885018
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885018/suppl/GSM885018.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885019 | GPL570 |
|
GBM_11-056
|
Primary brain tumor tissue
|
age at diagnosis (years): 25
gender: female
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885019
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885019/suppl/GSM885019.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885020 | GPL570 |
|
GBM_11-057
|
Primary brain tumor tissue
|
age at diagnosis (years): 38
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: NA
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885020
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885020/suppl/GSM885020.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885021 | GPL570 |
|
GBM_11-058
|
Primary brain tumor tissue
|
age at diagnosis (years): 18
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: frontal lobe
subgroup: IDH
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885021
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885021/suppl/GSM885021.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885022 | GPL570 |
|
GBM_11-059
|
Primary brain tumor tissue
|
age at diagnosis (years): 36
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: NA
subgroup: RTK II
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885022
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885022/suppl/GSM885022.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885023 | GPL570 |
|
GBM_11-078
|
Primary brain tumor tissue
|
age at diagnosis (years): 10
gender: male
h3f3a status: K27M
idh1 status: WT
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885023
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885023/suppl/GSM885023.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885024 | GPL570 |
|
GBM_11-079
|
Primary brain tumor tissue
|
age at diagnosis (years): 0
gender: female
h3f3a status: WT
idh1 status: NA
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885024
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885024/suppl/GSM885024.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885025 | GPL570 |
|
GBM_11-080
|
Primary brain tumor tissue
|
age at diagnosis (years): 0
gender: male
h3f3a status: WT
idh1 status: NA
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885025
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885025/suppl/GSM885025.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885026 | GPL570 |
|
GBM_11-081
|
Primary brain tumor tissue
|
age at diagnosis (years): NA
gender: female
h3f3a status: NA
idh1 status: NA
tumor location: hemispheric
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885026
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885026/suppl/GSM885026.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885027 | GPL570 |
|
GBM_11-082
|
Primary brain tumor tissue
|
age at diagnosis (years): NA
gender: male
h3f3a status: NA
idh1 status: NA
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885027
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885027/suppl/GSM885027.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885028 | GPL570 |
|
GBM_11-083
|
Primary brain tumor tissue
|
age at diagnosis (years): 1
gender: male
h3f3a status: WT
idh1 status: MUT
tumor location: hemispheric
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885028
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885028/suppl/GSM885028.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885029 | GPL570 |
|
GBM_11-084
|
Primary brain tumor tissue
|
age at diagnosis (years): 19
gender: female
h3f3a status: G34V
idh1 status: NA
tumor location: parieto-occipital
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885029
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885029/suppl/GSM885029.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885030 | GPL570 |
|
GBM_11-087
|
Primary brain tumor tissue
|
age at diagnosis (years): 14
gender: male
h3f3a status: G34R
idh1 status: NA
tumor location: temporo-parietal
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885030
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885030/suppl/GSM885030.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM885031 | GPL570 |
|
GBM_11-088
|
Primary brain tumor tissue
|
age at diagnosis (years): 0
gender: male
h3f3a status: WT
idh1 status: NA
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM885031
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Mar 02 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM885nnn/GSM885031/suppl/GSM885031.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958490 | GPL570 |
|
GBM_11-145
|
Primary brain tumor tissue
|
age at diagnosis (years): 7
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: thalamic
subgroup: K27
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958490
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958490/suppl/GSM958490_DKFZ0487.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958491 | GPL570 |
|
GBM_11-146
|
Primary brain tumor tissue
|
age at diagnosis (years): 17
gender: female
h3f3a status: G34R
idh1 status: WT
tumor location: frontal lobe
subgroup: G34
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958491
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958491/suppl/GSM958491_DKFZ0482.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958492 | GPL570 |
|
GBM_11-147
|
Primary brain tumor tissue
|
age at diagnosis (years): 12
gender: female
h3f3a status: G34R
idh1 status: WT
tumor location: NA
subgroup: G34
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958492
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958492/suppl/GSM958492_DKFZ0479.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958493 | GPL570 |
|
GBM_11-148
|
Primary brain tumor tissue
|
age at diagnosis (years): 6
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: pons
subgroup: K27
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958493
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958493/suppl/GSM958493_DKFZ0480.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958494 | GPL570 |
|
GBM_11-152
|
Primary brain tumor tissue
|
age at diagnosis (years): 5
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: temporal lobe
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958494
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958494/suppl/GSM958494_DKFZ0476.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958495 | GPL570 |
|
GBM_11-153
|
Primary brain tumor tissue
|
age at diagnosis (years): 14
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: central region
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958495
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958495/suppl/GSM958495_DKFZ0477.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958496 | GPL570 |
|
GBM_11-154
|
Primary brain tumor tissue
|
age at diagnosis (years): 5
gender: male
h3f3a status: WT
idh1 status: WT
tumor location: temporal lobe
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958496
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958496/suppl/GSM958496_DKFZ0478.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958497 | GPL570 |
|
GBM_11-155
|
Primary brain tumor tissue
|
age at diagnosis (years): 9
gender: female
h3f3a status: K27M
idh1 status: WT
tumor location: NA
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958497
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958497/suppl/GSM958497_DKFZ0481.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958498 | GPL570 |
|
GBM_11-156
|
Primary brain tumor tissue
|
age at diagnosis (years): 14
gender: male
h3f3a status: G34R
idh1 status: WT
tumor location: parietal lobe
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958498
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958498/suppl/GSM958498_DKFZ0483.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
| |
|
GSM958499 | GPL570 |
|
GBM_11-157
|
Primary brain tumor tissue
|
age at diagnosis (years): 19
gender: female
h3f3a status: WT
idh1 status: MUT
tumor location: temporal lobe
subgroup: NA
|
Gene expression data from a glioblastoma tumor sample
|
Sample_geo_accession | GSM958499
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958499/suppl/GSM958499_DKFZ0484.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
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GSM958500 | GPL570 |
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GBM_11-158
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Primary brain tumor tissue
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age at diagnosis (years): 14
gender: female
h3f3a status: WT
idh1 status: WT
tumor location: frontal lobe
subgroup: NA
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Gene expression data from a glioblastoma tumor sample
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Sample_geo_accession | GSM958500
| Sample_status | Public on Oct 16 2012
| Sample_submission_date | Jul 10 2012
| Sample_last_update_date | Oct 16 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Total RNA from biopsy samples was isolated after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany), using the TRIzol reagent (Invitrogen, Carlsbad, USA), and subsequently passed over a RNeasy Mini Spin Column (Qiagen, Hilden, Germany) for the removal of small fragments. Integrity control and sample quantitation of total extracted RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, DE, USA).
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | Affymetrix protocol
| Sample_hyb_protocol | Affymetrix protocol
| Sample_scan_protocol | Affymetrix protocol
| Sample_data_processing = For normalization of the expression data we used the MAS5.0 algorithm of the GCOS program (Affymetrix Inc). Target intensity was set to 100 (α1= 0.04 and α2 = 0.06). Detection p-values were assigned to each probe set using the MAS5.0 algorithm (trimmed mean 96 | 100). Quality of the arrays was ensured by inspection of the ß-actin and GAPDH 5′-3′ ratios as well as the percentage of present calls generated by the MAS5.0 algorithm (Affymetrix Inc).
| Sample_platform_id | GPL570
| Sample_contact_name | Marcel,,Kool
| Sample_contact_email | m.kool@dkfz.de
| Sample_contact_phone | 00496221424636
| Sample_contact_department | Pediatric Neuro Oncology
| Sample_contact_institute | German Cancer Research Center
| Sample_contact_address | Im Neuenheimer Feld 580
| Sample_contact_city | Heidelberg
| Sample_contact_zip/postal_code | 69120
| Sample_contact_country | Germany
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM958nnn/GSM958500/suppl/GSM958500_DKFZ0486.CEL.gz
| Sample_series_id | GSE36245
| Sample_data_row_count | 46201
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