Search results for the GEO ID: GSE36359  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM889563 | GPL1261 |
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mouse fibroblasts Adeno Cre in vitro
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in vitro deletion of RBP-Jk in mouse fibroblasts
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cell type: fibroblasts
genotype: in vitro deletion of RBP-Jk in mouse fibroblasts
genetic background: C57BL/6
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in vitro deletion of RBP-Jk in mouse fibroblasts
Adeno Cre
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| Sample_geo_accession | GSM889563
| | Sample_status | Public on Jun 12 2012
| | Sample_submission_date | Mar 08 2012
| | Sample_last_update_date | Jun 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Poly(A)+ mRNAs (2–5 μg) from cells under various conditions were used as template for double-stranded cDNA preparations with T7-(dT)24 oligonucleotide primers for the first-strand reaction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The resulting cDNAs were used for preparation of biotin-labeled antisense cRNA
| | Sample_hyb_protocol | Biotin-labeled cRNA (10ug/sample) was hybridized on Mouse Genome 430 2.0 Array Chips according to the manufacturer’s recommendation.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000. Raw microarray values were quantified using GeneChip Operating Software (Affymetrix).
| | Sample_data_processing | Raw data files were loaded into the Resolver SE System (Rosetta Biosoftware) for data processing and normalization, using platform-specific error models. Intensity profiles were then compared to form ratio experiments where each gene is associated to an expression fold-change and a p-value that assesses the statistical significance of its modulation in the “treated” versus the control sample.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | giovanna,,chiorino
| | Sample_contact_email | giovanna.chiorino@gmail.com
| | Sample_contact_department | Cancer Genomics
| | Sample_contact_institute | Fondo Edo Tempia
| | Sample_contact_address | via malta 3
| | Sample_contact_city | Biella
| | Sample_contact_zip/postal_code | 13900
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM889nnn/GSM889563/suppl/GSM889563_Adeno_Cre.CEL.gz
| | Sample_series_id | GSE36359
| | Sample_data_row_count | 45101
| | |
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GSM889564 | GPL1261 |
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mouse fibroblasts Adeno GFP in vitro
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control for in vitro deletion of RBP-Jk in mouse fibroblasts
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cell type: fibroblasts
genotype: control for in vitro deletion of RBP-Jk in mouse
genetic background: C57BL/6fibroblasts
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control for in vitro deletion of RBP-Jk in mouse fibroblasts
Adeno GFP
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| Sample_geo_accession | GSM889564
| | Sample_status | Public on Jun 12 2012
| | Sample_submission_date | Mar 08 2012
| | Sample_last_update_date | Jun 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Poly(A)+ mRNAs (2–5 μg) from cells under various conditions were used as template for double-stranded cDNA preparations with T7-(dT)24 oligonucleotide primers for the first-strand reaction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The resulting cDNAs were used for preparation of biotin-labeled antisense cRNA
| | Sample_hyb_protocol | Biotin-labeled cRNA (10ug/sample) was hybridized on Mouse Genome 430 2.0 Array Chips according to the manufacturer’s recommendation.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000. Raw microarray values were quantified using GeneChip Operating Software (Affymetrix).
| | Sample_data_processing | Raw data files were loaded into the Resolver SE System (Rosetta Biosoftware) for data processing and normalization, using platform-specific error models. Intensity profiles were then compared to form ratio experiments where each gene is associated to an expression fold-change and a p-value that assesses the statistical significance of its modulation in the “treated” versus the control sample.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | giovanna,,chiorino
| | Sample_contact_email | giovanna.chiorino@gmail.com
| | Sample_contact_department | Cancer Genomics
| | Sample_contact_institute | Fondo Edo Tempia
| | Sample_contact_address | via malta 3
| | Sample_contact_city | Biella
| | Sample_contact_zip/postal_code | 13900
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM889nnn/GSM889564/suppl/GSM889564_Adeno_GFP.CEL.gz
| | Sample_series_id | GSE36359
| | Sample_data_row_count | 45101
| | |
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GSM889565 | GPL1261 |
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mouse fibroblasts ColI Cre x RBP loxp-loxp in vivo
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in vivo deletion of RBP-Jk in mouse fibroblasts
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cell type: fibroblasts
genotype: in vivo deletion of RBP-Jk in mouse fibroblasts
genetic background: C57BL/6
|
in vivo deletion of RBP-Jk in mouse fibroblasts
ColI Cre x RBP loxp-loxp
|
| Sample_geo_accession | GSM889565
| | Sample_status | Public on Jun 12 2012
| | Sample_submission_date | Mar 08 2012
| | Sample_last_update_date | Jun 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Poly(A)+ mRNAs (2–5 μg) from cells under various conditions were used as template for double-stranded cDNA preparations with T7-(dT)24 oligonucleotide primers for the first-strand reaction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The resulting cDNAs were used for preparation of biotin-labeled antisense cRNA
| | Sample_hyb_protocol | Biotin-labeled cRNA (10ug/sample) was hybridized on Mouse Genome 430 2.0 Array Chips according to the manufacturer’s recommendation.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000. Raw microarray values were quantified using GeneChip Operating Software (Affymetrix).
| | Sample_data_processing | Raw data files were loaded into the Resolver SE System (Rosetta Biosoftware) for data processing and normalization, using platform-specific error models. Intensity profiles were then compared to form ratio experiments where each gene is associated to an expression fold-change and a p-value that assesses the statistical significance of its modulation in the “treated” versus the control sample.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | giovanna,,chiorino
| | Sample_contact_email | giovanna.chiorino@gmail.com
| | Sample_contact_department | Cancer Genomics
| | Sample_contact_institute | Fondo Edo Tempia
| | Sample_contact_address | via malta 3
| | Sample_contact_city | Biella
| | Sample_contact_zip/postal_code | 13900
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM889nnn/GSM889565/suppl/GSM889565_ColI_Cre_x_RBP_loxp-loxp.CEL.gz
| | Sample_series_id | GSE36359
| | Sample_data_row_count | 45101
| | |
|
GSM889566 | GPL1261 |
|
mouse fibroblasts RBP loxp-loxp in vivo
|
control for in vivo deletion of RBP-Jk in mouse fibroblasts
|
cell type: fibroblasts
genotype: control for in vivo deletion of RBP-Jk in mouse fibroblasts
genetic background: C57BL/6
|
control for in vivo deletion of RBP-Jk in mouse fibroblasts
RBP loxp-loxp
|
| Sample_geo_accession | GSM889566
| | Sample_status | Public on Jun 12 2012
| | Sample_submission_date | Mar 08 2012
| | Sample_last_update_date | Jun 12 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | polyA RNA
| | Sample_extract_protocol_ch1 | Poly(A)+ mRNAs (2–5 μg) from cells under various conditions were used as template for double-stranded cDNA preparations with T7-(dT)24 oligonucleotide primers for the first-strand reaction.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The resulting cDNAs were used for preparation of biotin-labeled antisense cRNA
| | Sample_hyb_protocol | Biotin-labeled cRNA (10ug/sample) was hybridized on Mouse Genome 430 2.0 Array Chips according to the manufacturer’s recommendation.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000. Raw microarray values were quantified using GeneChip Operating Software (Affymetrix).
| | Sample_data_processing | Raw data files were loaded into the Resolver SE System (Rosetta Biosoftware) for data processing and normalization, using platform-specific error models. Intensity profiles were then compared to form ratio experiments where each gene is associated to an expression fold-change and a p-value that assesses the statistical significance of its modulation in the “treated” versus the control sample.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | giovanna,,chiorino
| | Sample_contact_email | giovanna.chiorino@gmail.com
| | Sample_contact_department | Cancer Genomics
| | Sample_contact_institute | Fondo Edo Tempia
| | Sample_contact_address | via malta 3
| | Sample_contact_city | Biella
| | Sample_contact_zip/postal_code | 13900
| | Sample_contact_country | Italy
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM889nnn/GSM889566/suppl/GSM889566_RBP_loxp-loxp.CEL.gz
| | Sample_series_id | GSE36359
| | Sample_data_row_count | 45101
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