Search results for the GEO ID: GSE36407  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM892482 | GPL339 |
|
SHAM at ZT23, biological rep1
|
SH mouse heart ZT23
|
tissue: left ventricle of heart
disease state: normal
time point: 23 hr
|
|
| Sample_geo_accession | GSM892482
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892482/suppl/GSM892482.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892482/suppl/GSM892482.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892483 | GPL339 |
|
SHAM at ZT03, biological rep1
|
SH mouse heart ZT03
|
tissue: left ventricle of heart
disease state: normal
time point: 3 hr
|
|
| Sample_geo_accession | GSM892483
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892483/suppl/GSM892483.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892483/suppl/GSM892483.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892484 | GPL339 |
|
SHAM at ZT07, biological rep1
|
SH mouse heart ZT07
|
tissue: left ventricle of heart
disease state: normal
time point: 7 hr
|
|
| Sample_geo_accession | GSM892484
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892484/suppl/GSM892484.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892484/suppl/GSM892484.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892485 | GPL339 |
|
SHAM at ZT11, biological rep1
|
SH mouse heart ZT11
|
tissue: left ventricle of heart
disease state: normal
time point: 11 hr
|
|
| Sample_geo_accession | GSM892485
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892485/suppl/GSM892485.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892485/suppl/GSM892485.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892486 | GPL339 |
|
SHAM at ZT15, biological rep1
|
SH mouse heart ZT15
|
tissue: left ventricle of heart
disease state: normal
time point: 15 hr
|
|
| Sample_geo_accession | GSM892486
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892486/suppl/GSM892486.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892486/suppl/GSM892486.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892487 | GPL339 |
|
SHAM at ZT19, biological rep1
|
SH mouse heart ZT19
|
tissue: left ventricle of heart
disease state: normal
time point: 19 hr
|
|
| Sample_geo_accession | GSM892487
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892487/suppl/GSM892487.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892487/suppl/GSM892487.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892488 | GPL339 |
|
SHAM at ZT23, biological rep2
|
SH mouse heart ZT23
|
tissue: left ventricle of heart
disease state: normal
time point: 23 hr
|
|
| Sample_geo_accession | GSM892488
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892488/suppl/GSM892488.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892488/suppl/GSM892488.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892489 | GPL339 |
|
SHAM at ZT03, biological rep2
|
SH mouse heart ZT03
|
tissue: left ventricle of heart
disease state: normal
time point: 3 hr
|
|
| Sample_geo_accession | GSM892489
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892489/suppl/GSM892489.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892489/suppl/GSM892489.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892490 | GPL339 |
|
SHAM at ZT07, biological rep2
|
SH mouse heart ZT07
|
tissue: left ventricle of heart
disease state: normal
time point: 7 hr
|
|
| Sample_geo_accession | GSM892490
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892490/suppl/GSM892490.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892490/suppl/GSM892490.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892491 | GPL339 |
|
SHAM at ZT11, biological rep2
|
SH mouse heart ZT11
|
tissue: left ventricle of heart
disease state: normal
time point: 11 hr
|
|
| Sample_geo_accession | GSM892491
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892491/suppl/GSM892491.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892491/suppl/GSM892491.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892492 | GPL339 |
|
SHAM at ZT15, biological rep2
|
SH mouse heart ZT15
|
tissue: left ventricle of heart
disease state: normal
time point: 15 hr
|
|
| Sample_geo_accession | GSM892492
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892492/suppl/GSM892492.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892492/suppl/GSM892492.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892493 | GPL339 |
|
SHAM at ZT19, biological rep2
|
SH mouse heart ZT19
|
tissue: left ventricle of heart
disease state: normal
time point: 19 hr
|
|
| Sample_geo_accession | GSM892493
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892493/suppl/GSM892493.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892493/suppl/GSM892493.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892494 | GPL339 |
|
SHAM at ZT23, biological rep3
|
SH mouse heart ZT23
|
tissue: left ventricle of heart
disease state: normal
time point: 23 hr
|
|
| Sample_geo_accession | GSM892494
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892494/suppl/GSM892494.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892494/suppl/GSM892494.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892495 | GPL339 |
|
SHAM at ZT03, biological rep3
|
SH mouse heart ZT03
|
tissue: left ventricle of heart
disease state: normal
time point: 3 hr
|
|
| Sample_geo_accession | GSM892495
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892495/suppl/GSM892495.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892495/suppl/GSM892495.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892496 | GPL339 |
|
SHAM at ZT07, biological rep3
|
SH mouse heart ZT07
|
tissue: left ventricle of heart
disease state: normal
time point: 7 hr
|
|
| Sample_geo_accession | GSM892496
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892496/suppl/GSM892496.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892496/suppl/GSM892496.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892497 | GPL339 |
|
SHAM at ZT11, biological rep3
|
SH mouse heart ZT11
|
tissue: left ventricle of heart
disease state: normal
time point: 11 hr
|
|
| Sample_geo_accession | GSM892497
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892497/suppl/GSM892497.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892497/suppl/GSM892497.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892498 | GPL339 |
|
SHAM at ZT15, biological rep3
|
SH mouse heart ZT15
|
tissue: left ventricle of heart
disease state: normal
time point: 15 hr
|
|
| Sample_geo_accession | GSM892498
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892498/suppl/GSM892498.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892498/suppl/GSM892498.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892499 | GPL339 |
|
SHAM at ZT19, biological rep3
|
SH mouse heart ZT19
|
tissue: left ventricle of heart
disease state: normal
time point: 19 hr
|
|
| Sample_geo_accession | GSM892499
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892499/suppl/GSM892499.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892499/suppl/GSM892499.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892500 | GPL339 |
|
TAC at ZT23, biological rep1
|
TAC mouse heart ZT23
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 23 hr
|
|
| Sample_geo_accession | GSM892500
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892500/suppl/GSM892500.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892500/suppl/GSM892500.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892501 | GPL339 |
|
TAC at ZT03, biological rep1
|
TAC mouse heart ZT03
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 3 hr
|
|
| Sample_geo_accession | GSM892501
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892501/suppl/GSM892501.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892501/suppl/GSM892501.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892502 | GPL339 |
|
TAC at ZT07, biological rep1
|
TAC mouse heart ZT07
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 7 hr
|
|
| Sample_geo_accession | GSM892502
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892502/suppl/GSM892502.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892502/suppl/GSM892502.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892503 | GPL339 |
|
TAC at ZT11, biological rep1
|
TAC mouse heart ZT11
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 11 hr
|
|
| Sample_geo_accession | GSM892503
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892503/suppl/GSM892503.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892503/suppl/GSM892503.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892504 | GPL339 |
|
TAC at ZT15, biological rep1
|
TAC mouse heart ZT15
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 15 hr
|
|
| Sample_geo_accession | GSM892504
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892504/suppl/GSM892504.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892504/suppl/GSM892504.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892505 | GPL339 |
|
TAC at ZT19, biological rep1
|
TAC mouse heart ZT19
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 19 hr
|
|
| Sample_geo_accession | GSM892505
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892505/suppl/GSM892505.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892505/suppl/GSM892505.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892506 | GPL339 |
|
TAC at ZT23, biological rep2
|
TAC mouse heart ZT23
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 23 hr
|
|
| Sample_geo_accession | GSM892506
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892506/suppl/GSM892506.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892506/suppl/GSM892506.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892507 | GPL339 |
|
TAC at ZT03, biological rep2
|
TAC mouse heart ZT03
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 3 hr
|
|
| Sample_geo_accession | GSM892507
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892507/suppl/GSM892507.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892507/suppl/GSM892507.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892508 | GPL339 |
|
TAC at ZT07, biological rep2
|
TAC mouse heart ZT07
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 7 hr
|
|
| Sample_geo_accession | GSM892508
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892508/suppl/GSM892508.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892508/suppl/GSM892508.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892509 | GPL339 |
|
TAC at ZT11, biological rep2
|
TAC mouse heart ZT11
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 11 hr
|
|
| Sample_geo_accession | GSM892509
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892509/suppl/GSM892509.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892509/suppl/GSM892509.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892510 | GPL339 |
|
TAC at ZT15, biological rep2
|
TAC mouse heart ZT15
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 15 hr
|
|
| Sample_geo_accession | GSM892510
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892510/suppl/GSM892510.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892510/suppl/GSM892510.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892511 | GPL339 |
|
TAC at ZT19, biological rep2
|
TAC mouse heart ZT19
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 19 hr
|
|
| Sample_geo_accession | GSM892511
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892511/suppl/GSM892511.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892511/suppl/GSM892511.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892512 | GPL339 |
|
TAC at ZT23, biological rep3
|
TAC mouse heart ZT23
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 23 hr
|
|
| Sample_geo_accession | GSM892512
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892512/suppl/GSM892512.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892512/suppl/GSM892512.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892513 | GPL339 |
|
TAC at ZT03, biological rep3
|
TAC mouse heart ZT03
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 3 hr
|
|
| Sample_geo_accession | GSM892513
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892513/suppl/GSM892513.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892513/suppl/GSM892513.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892514 | GPL339 |
|
TAC at ZT07, biological rep3
|
TAC mouse heart ZT07
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 7 hr
|
|
| Sample_geo_accession | GSM892514
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892514/suppl/GSM892514.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892514/suppl/GSM892514.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892515 | GPL339 |
|
TAC at ZT11 ,biological rep3
|
TAC mouse heart ZT11
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 11 hr
|
|
| Sample_geo_accession | GSM892515
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892515/suppl/GSM892515.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892515/suppl/GSM892515.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892516 | GPL339 |
|
TAC at ZT15, biological rep3
|
TAC mouse heart ZT15
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 15 hr
|
|
| Sample_geo_accession | GSM892516
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892516/suppl/GSM892516.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892516/suppl/GSM892516.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
|
GSM892517 | GPL339 |
|
TAC at ZT19, biological rep3
|
TAC mouse heart ZT19
|
tissue: left ventricle of heart
disease state: cardiovascular disease (TAC)
time point: 19 hr
|
|
| Sample_geo_accession | GSM892517
| | Sample_status | Public on Mar 15 2013
| | Sample_submission_date | Mar 09 2012
| | Sample_last_update_date | Mar 15 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | The hearts were collected and snap frozen in liquid Nitrogen.
| | Sample_growth_protocol_ch1 | The mice had either TAC or SHAM surgeries, then lived for 8 weeks after surgery (either SHAM or Transverse Aortic Constricton). After 8 weeks, the TAC and SHAM mice were sacrificed over 24 hrs at six timepoints.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using the Trizol method according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Murine MOE430A Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
| | Sample_data_processing | The data were analyzed with GeneSpring GX Software v. 11.5 using default Affymetrix settings and DeltaGene.
| | Sample_platform_id | GPL339
| | Sample_contact_name | Elena,,Tsimakouridze
| | Sample_contact_email | etsimako@uoguelph.ca
| | Sample_contact_institute | University of Guelph
| | Sample_contact_address | 50 Stone Rd E
| | Sample_contact_city | Guelph
| | Sample_contact_zip/postal_code | N1G 2W1
| | Sample_contact_country | Canada
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892517/suppl/GSM892517.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM892nnn/GSM892517/suppl/GSM892517.CHP.gz
| | Sample_series_id | GSE36407
| | Sample_data_row_count | 22690
| | |
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