Search results for the GEO ID: GSE36477  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM894460 | GPL1261 |
|
Control 48 hours pool 1
|
Mammary gland macrophages from non-transgenic mice treated with dimerizer for 48 hours
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: control
treatment: Cd11b-PE
time: 48 h
|
Gene expression data from pooled samples of macrophages (from 3 non-transgenic mice) following 48 hours of dimerizer treatment
|
| Sample_geo_accession | GSM894460
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894460/suppl/GSM894460_hnl_JR_2763_MA2_10599.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894461 | GPL1261 |
|
MMTV-iFGFR1 48 hours pool 1
|
Mammary gland macrophages fromMMTV-iFGFR1 transgenic mice treated with dimerizer for 48 hours
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: MMTV-iFGFR1 transgenic
treatment: Cd11b-PE
time: 48 h
|
Gene expression data from pooled samples of macrophages (from 3 MMTV-iFGFR1 transgenic mice) following 48 hours of dimerizer treatment
|
| Sample_geo_accession | GSM894461
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894461/suppl/GSM894461_hnl_JR_2763_MA2_10600.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894462 | GPL1261 |
|
Control 4 weeks pool 1
|
Mammary gland macrophages from non-transgenic mice treated with dimerizer for 4 weeks
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: control
treatment: Cd11b-PE
time: 4 w
|
Gene expression data from pooled samples of macrophages (from 3 non-transgenic mice) following 4 weeks of dimerizer treatment
|
| Sample_geo_accession | GSM894462
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894462/suppl/GSM894462_hnl_JR_2763_MA2_10601.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894463 | GPL1261 |
|
MMTV-iFGFR1 4 weeks pool 1
|
Mammary gland macrophages fromMMTV-iFGFR1 transgenic mice treated with dimerizer for 4 weeks
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: MMTV-iFGFR1 transgenic
treatment: Cd11b-PE
time: 4 w
|
Gene expression data from pooled samples of macrophages (from 3 MMTV-iFGFR1 transgenic mice) following 4 weeks of dimerizer treatment
|
| Sample_geo_accession | GSM894463
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894463/suppl/GSM894463_hnl_JR_2763_MA2_10602.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894464 | GPL1261 |
|
Control 48 hours pool 2
|
Mammary gland macrophages from non-transgenic mice treated with dimerizer for 48 hours
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: control
treatment: Cd11b-PE
time: 48 h
|
Gene expression data from pooled samples of macrophages (from 3 non-transgenic mice) following 48 hours of dimerizer treatment
|
| Sample_geo_accession | GSM894464
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894464/suppl/GSM894464_hnl_JR_2763_MA2_10666.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894465 | GPL1261 |
|
MMTV-iFGFR1 48 hours pool 2
|
Mammary gland macrophages fromMMTV-iFGFR1 transgenic mice treated with dimerizer for 48 hours
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: MMTV-iFGFR1 transgenic
treatment: Cd11b-PE
time: 48 h
|
Gene expression data from pooled samples of macrophages (from 3 MMTV-iFGFR1 transgenic mice) following 48 hours of dimerizer treatment
|
| Sample_geo_accession | GSM894465
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894465/suppl/GSM894465_hnl_JR_2763_MA2_10668.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894466 | GPL1261 |
|
Control 4 weeks pool 2
|
Mammary gland macrophages from non-transgenic mice treated with dimerizer for 4 weeks
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: control
treatment: Cd11b-PE
time: 4 w
|
Gene expression data from pooled samples of macrophages (from 3 non-transgenic mice) following 4 weeks of dimerizer treatment
|
| Sample_geo_accession | GSM894466
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894466/suppl/GSM894466_hnl_JR_2763_MA2_10671.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
|
GSM894467 | GPL1261 |
|
MMTV-iFGFR1 4 weeks pool 2
|
Mammary gland macrophages fromMMTV-iFGFR1 transgenic mice treated with dimerizer for 4 weeks
|
cell type: Mammary gland macrophages
genetic background: FVB
genotype: MMTV-iFGFR1 transgenic
treatment: Cd11b-PE
time: 4 w
|
Gene expression data from pooled samples of macrophages (from 3 non-transgenic mice) following 4 weeks of dimerizer treatment
|
| Sample_geo_accession | GSM894467
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | Mar 13 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | 6-week-old MMTV-iFGFR1 transgenic mice and non-transgenic littermates on an inbred FVB background, were injected with dimerizer to activate inducible FGFR1 for 48 hours or 4 weeks, mammary glands were harvested and digested with 2 mg/ml collagenase A for 45 minutes, Cells were washed, stained with Cd11b-PE and sorted, Samples from 3 mice were pooled for RNA extraction
| | Sample_growth_protocol_ch1 | 6-week-old female mice were housed under standard conditions
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated from the sorted cells using the PicoPure RNA isolation kit (Arcturus), following by mRNA amplification using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | standard Affymetrix small sample labeling protocol
| | Sample_hyb_protocol | standard Affymetrix hybridization protocol
| | Sample_scan_protocol | standard GeneChip Scanner 3000 protocol
| | Sample_data_processing | Microarray Suite version 5.0
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kaylee ,,Schwertfeger
| | Sample_contact_email | schwe251@umn.edu
| | Sample_contact_department | Lab Medicine and Pathology
| | Sample_contact_institute | University of Minnesota
| | Sample_contact_address | 420 Delaware St. SE MMC 609
| | Sample_contact_city | Minneapolis
| | Sample_contact_state | MN
| | Sample_contact_zip/postal_code | 55455
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM894nnn/GSM894467/suppl/GSM894467_hnl_JR_2763_MA2_10672.CEL.gz
| | Sample_series_id | GSE36477
| | Sample_data_row_count | 45101
| | |
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