Search results for the GEO ID: GSE36513  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM896019 | GPL1261 |
|
WDR5_WT_dox_rep1
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: WT
treatment: dox
|
replicate 1
|
| Sample_geo_accession | GSM896019
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896019/suppl/GSM896019_A.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896020 | GPL1261 |
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WDR5_WT_dox_rep2
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: WT
treatment: dox
|
replicate 2
|
| Sample_geo_accession | GSM896020
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896020/suppl/GSM896020_B.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896021 | GPL1261 |
|
WDR5_WT_NOdox_rep1
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: WT
treatment: nodox
|
replicate 1
|
| Sample_geo_accession | GSM896021
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896021/suppl/GSM896021_C.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896022 | GPL1261 |
|
WDR5_WT_NOdox_rep2
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: WT
treatment: nodox
|
replicate 2
|
| Sample_geo_accession | GSM896022
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896022/suppl/GSM896022_D.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896023 | GPL1261 |
|
WDR5_F266A_dox_rep1
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: F266A
treatment: dox
|
replicate 1
|
| Sample_geo_accession | GSM896023
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896023/suppl/GSM896023_E.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896024 | GPL1261 |
|
WDR5_F266A_dox_rep2
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: F266A
treatment: dox
|
replicate 2
|
| Sample_geo_accession | GSM896024
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896024/suppl/GSM896024_F.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896025 | GPL1261 |
|
WDR5_F266A_NOdox_rep1
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: F266A
treatment: nodox
|
replicate 1
|
| Sample_geo_accession | GSM896025
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896025/suppl/GSM896025_G.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
| | |
|
GSM896026 | GPL1261 |
|
WDR5_F266A_NOdox_rep2
|
V6.5 Mouse embryonic stem cells
|
cell type: V6.5 Mouse embryonic stem cells
transfection: F266A
treatment: nodox
|
replicate 2
|
| Sample_geo_accession | GSM896026
| | Sample_status | Public on Feb 18 2013
| | Sample_submission_date | Mar 14 2012
| | Sample_last_update_date | Feb 18 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Lentiviral infection +/- doxycycline
| | Sample_growth_protocol_ch1 | Lentiviral infected GFP+ mouse embryonic stem cells were grown in full media with or without doxycycline (2 ug/mL)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol and qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_laboratory | Howard Chang
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM896nnn/GSM896026/suppl/GSM896026_H.CEL.gz
| | Sample_series_id | GSE36513
| | Sample_data_row_count | 45101
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