Search results for the GEO ID: GSE36665  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM898286 | GPL1261 |
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WWOX Wildtype mice, biological rep1
|
Mammary gland epithelial organoids_WWOX Wildtype
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-WT, BK5-cre -; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
WT1
Gene expression data from BK5-cre -; WWOX flox/flox
|
| Sample_geo_accession | GSM898286
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898286/suppl/GSM898286_WT001.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
|
GSM898287 | GPL1261 |
|
WWOX Wildtype mice, biological rep2
|
Mammary gland epithelial organoids_WWOX Wildtype
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-WT, BK5-cre -; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
WT2
Gene expression data from BK5-cre -; WWOX flox/flox
|
| Sample_geo_accession | GSM898287
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898287/suppl/GSM898287_WT002.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
|
GSM898288 | GPL1261 |
|
WWOX Wildtype mice, biological rep3
|
Mammary gland epithelial organoids_WWOX Wildtype
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-WT, BK5-cre -; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
WT3
Gene expression data from BK5-cre -; WWOX flox/flox
|
| Sample_geo_accession | GSM898288
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898288/suppl/GSM898288_WT003.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
|
GSM898289 | GPL1261 |
|
WWOX Knockout mice, biological rep1
|
Mammary gland epithelial organoids_WWOX Knockout
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-KO, BK5-cre +; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
KO5
Gene expression data from BK5-cre +; WWOX flox/flox
|
| Sample_geo_accession | GSM898289
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898289/suppl/GSM898289_KO005.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
|
GSM898290 | GPL1261 |
|
WWOX Knockout mice, biological rep2
|
Mammary gland epithelial organoids_WWOX Knockout
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-KO, BK5-cre +; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
KO6
Gene expression data from BK5-cre +; WWOX flox/flox
|
| Sample_geo_accession | GSM898290
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898290/suppl/GSM898290_KO006.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
|
GSM898291 | GPL1261 |
|
WWOX Knockout mice, biological rep3
|
Mammary gland epithelial organoids_WWOX Knockout
|
strain background: mixed (129/J; C57BL/6)
genotype/variation: WWOX-KO, BK5-cre +; WWOX flox/flox
age: 8 weeks
tissue: Mammary gland epithelial organoids
|
KO7
Gene expression data from BK5-cre +; WWOX flox/flox
|
| Sample_geo_accession | GSM898291
| | Sample_status | Public on Apr 15 2012
| | Sample_submission_date | Mar 21 2012
| | Sample_last_update_date | Apr 15 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated and purified using the TRIzol/RNeasy Kit (Qiagen) from mammary epithelial organoids.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA.
| | Sample_hyb_protocol | Following fragmentation, cRNA were hybridized on Affymetrix GeneChip Mouse Genome 430 2.0
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner.
| | Sample_data_processing | QC and data pre-processing were performed in R/Bioconductor using the simpleaffy package (version 2.10.31). In order to gather the statistics, we processed the CEL files using the RMA normalization algorithm.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | C. Marcelo,,Aldaz
| | Sample_contact_email | maaldaz@mdanderson.org
| | Sample_contact_phone | 512-237-9530
| | Sample_contact_laboratory | Aldaz Lab
| | Sample_contact_department | Molecular Carcinogenesis
| | Sample_contact_institute | The University of TX M.D. Anderson Cancer Center
| | Sample_contact_address | POB 389
| | Sample_contact_city | Smithville
| | Sample_contact_zip/postal_code | 78957
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM898nnn/GSM898291/suppl/GSM898291_KO007.CEL.gz
| | Sample_series_id | GSE36665
| | Sample_data_row_count | 45101
| | |
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