Search results for the GEO ID: GSE36824 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM902469 | GPL570 |
|
MC0002_MCA0061_BM_CD138pos_GEP
|
MC0002_MCA0061_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902469
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902469/suppl/GSM902469_MC0002_MCA0061_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902470 | GPL570 |
|
MC0002_MCA0122_BM_CD138pos_GEP
|
MC0002_MCA0122_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 9.93
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902470
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902470/suppl/GSM902470_MC0002_MCA0122_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902471 | GPL570 |
|
MC0003_MCA0650_PB_CD138pos_GEP
|
MC0003_MCA0650_PB_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 6p21
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 14
time since sample1 months: 22.1
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902471
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902471/suppl/GSM902471_MC0003_MCA0650_PB_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902472 | GPL570 |
|
MC0004_MCR1470_BM_CD138pos_GEP
|
MC0004_MCR1470_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 4p16
cyto risk: high
17p13 deletion: monoallelic
ploidy: hyperdiploid
uams 70gene index: poor
copy number abnormalities: 30
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902472
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902472/suppl/GSM902472_MC0004_MCR1470_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902473 | GPL570 |
|
MC0004_MCR2845_BM_CD138pos_GEP
|
MC0004_MCR2845_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 4p16
cyto risk: high
17p13 deletion: monoallelic
ploidy: hyperdiploid
uams 70gene index: poor
copy number abnormalities: 35
time since sample1 months: 21.41
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902473
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902473/suppl/GSM902473_MC0004_MCR2845_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902474 | GPL570 |
|
MC0005_MCRxxx2_BM_CD138pos_GEP
|
MC0005_MCRxxx2_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 4p16
cyto risk: high
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: poor
copy number abnormalities: 28
time since sample1 months: 64.9
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902474
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902474/suppl/GSM902474_MC0005_MCRxxx2_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902475 | GPL570 |
|
MC0005_MCRxxx3_BM_CD138pos_GEP
|
MC0005_MCRxxx3_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 4p16
cyto risk: high
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902475
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902475/suppl/GSM902475_MC0005_MCRxxx3_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902476 | GPL570 |
|
MC0007_MCR3642_BM_CD138pos_GEP
|
MC0007_MCR3642_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 3
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902476
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902476/suppl/GSM902476_MC0007_MCR3642_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902477 | GPL570 |
|
MC0007_MCRxxx4_BM_CD138pos_GEP
|
MC0007_MCRxxx4_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 11
time since sample1 months: 19.93
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902477
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902477/suppl/GSM902477_MC0007_MCRxxx4_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902478 | GPL570 |
|
MC0134_MCR1312_BM_CD138pos_GEP
|
MC0134_MCR1312_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 10
time since sample1 months: 11.77
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902478
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902478/suppl/GSM902478_MC0134_MCR1312_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902479 | GPL570 |
|
MC0134_MCRxxx5_BM_CD138pos_GEP
|
MC0134_MCRxxx5_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 3
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 10
time since sample1 months: 63.34
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902479
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902479/suppl/GSM902479_MC0134_MCRxxx5_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902480 | GPL570 |
|
MC0391_MCA0375_BM_CD138pos_GEP
|
MC0391_MCA0375_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 6p21
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 11
time since sample1 months: 19.28
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902480
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902480/suppl/GSM902480_MC0391_MCA0375_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902481 | GPL570 |
|
MC0391_MCA0479_BM_CD138pos_GEP
|
MC0391_MCA0479_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 3
tc class: 6p21
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 15
time since sample1 months: 28
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902481
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902481/suppl/GSM902481_MC0391_MCA0479_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902482 | GPL570 |
|
MC0391_MCAxxx1_BM_CD138pos_GEP
|
MC0391_MCAxxx1_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 6p21
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 11
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902482
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902482/suppl/GSM902482_MC0391_MCAxxx1_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902483 | GPL570 |
|
MC0474_MCA0142_BM_CD138pos_GEP
|
MC0474_MCA0142_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 26
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902483
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902483/suppl/GSM902483_MC0474_MCA0142_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902484 | GPL570 |
|
MC0474_MCA0491_BM_CD138pos_GEP
|
MC0474_MCA0491_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 31
time since sample1 months: 29.44
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902484
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902484/suppl/GSM902484_MC0474_MCA0491_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902485 | GPL570 |
|
MC0506_MCA0147_BM_CD138pos_GEP
|
MC0506_MCA0147_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: maf
cyto risk: high
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: NA
copy number abnormalities: 21
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902485
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902485/suppl/GSM902485_MC0506_MCA0147_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902486 | GPL570 |
|
MC0678_PostTx_GEP
|
MC0678_PostTx RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: maf
cyto risk: high
17p13 deletion: monoallelic
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 60
time since sample1 months: 5.54
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902486
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902486/suppl/GSM902486_MC0678_PostTx_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902487 | GPL570 |
|
MC0678_PreTx_GEP
|
MC0678_PreTx RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: maf
cyto risk: high
17p13 deletion: monoallelic
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 36
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902487
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902487/suppl/GSM902487_MC0678_PreTx_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902488 | GPL570 |
|
MC1059_MCA0433_BM_CD138pos_GEP
|
MC1059_MCA0433_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 19
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902488
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902488/suppl/GSM902488_MC1059_MCA0433_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902489 | GPL570 |
|
MC1130_MCA0119_BM_CD138pos_GEP
|
MC1130_MCA0119_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 4p16
cyto risk: high
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 34
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902489
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902489/suppl/GSM902489_MC1130_MCA0119_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902490 | GPL570 |
|
MC1130_MCA0798_PB_CD138pos_U133P2
|
MC1130_MCA0798_PB_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 5
tc class: 4p16
cyto risk: high
17p13 deletion: biallelic
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 63
time since sample1 months: 48.39
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902490
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902490/suppl/GSM902490_MC1130_MCA0798_PB_CD138pos_U133P2.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902491 | GPL570 |
|
MC1272_MCA0123_BM_CD138pos_GEP
|
MC1272_MCA0123_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: none
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 11
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902491
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902491/suppl/GSM902491_MC1272_MCA0123_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902492 | GPL570 |
|
MC1472_MCA0404_BM_CD138pos_GEP
|
MC1472_MCA0404_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 10
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902492
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902492/suppl/GSM902492_MC1472_MCA0404_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902493 | GPL570 |
|
MC1472_MCA0658_BM_CD138pos_GEP
|
MC1472_MCA0658_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 25
time since sample1 months: 19.21
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902493
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902493/suppl/GSM902493_MC1472_MCA0658_BM_CD138pos_GEP.cel.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902494 | GPL570 |
|
MC1484_MCA0436_BM_CD138pos_GEP
|
MC1484_MCA0436_BM_CD138pos RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: maf
cyto risk: high
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 11
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902494
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902494/suppl/GSM902494_MC1484_MCA0436_BM_CD138pos_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902495 | GPL570 |
|
MMRC0035_1_GEP
|
MMRC0035_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: poor
copy number abnormalities: 33
time since sample1 months: 35.74
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902495
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902495/suppl/GSM902495_MMRC0035_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902496 | GPL570 |
|
MMRC0124_1_GEP
|
MMRC0124_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 10
time since sample1 months: 43.18
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902496
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902496/suppl/GSM902496_MMRC0124_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902497 | GPL570 |
|
MMRC0154_1_GEP
|
MMRC0154_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1+D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 7
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902497
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902497/suppl/GSM902497_MMRC0154_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902498 | GPL570 |
|
MMRC0154_2_GEP
|
MMRC0154_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1+D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 19
time since sample1 months: 16.98
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902498
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902498/suppl/GSM902498_MMRC0154_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902499 | GPL570 |
|
MMRC0155_1_GEP
|
MMRC0155_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902499
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902499/suppl/GSM902499_MMRC0155_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902500 | GPL570 |
|
MMRC0155_2_GEP
|
MMRC0155_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 14.75
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902500
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902500/suppl/GSM902500_MMRC0155_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902501 | GPL570 |
|
MMRC0161_1_GEP
|
MMRC0161_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902501
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902501/suppl/GSM902501_MMRC0161_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902502 | GPL570 |
|
MMRC0161_2_GEP
|
MMRC0161_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 13
time since sample1 months: 7.64
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902502
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902502/suppl/GSM902502_MMRC0161_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902503 | GPL570 |
|
MMRC0191_1_GEP
|
MMRC0191_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 31
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902503
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902503/suppl/GSM902503_MMRC0191_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902504 | GPL570 |
|
MMRC0191_2_GEP
|
MMRC0191_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 33
time since sample1 months: 22.07
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902504
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902504/suppl/GSM902504_MMRC0191_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902505 | GPL570 |
|
MMRC0206_1_GEP
|
MMRC0206_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 4p16
cyto risk: high
17p13 deletion: biallelic
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 33
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902505
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902505/suppl/GSM902505_MMRC0206_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902506 | GPL570 |
|
MMRC0206_2_GEP
|
MMRC0206_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 4p16
cyto risk: high
17p13 deletion: monoallelic
ploidy: non-hyperdiploid
uams 70gene index: poor
copy number abnormalities: 77
time since sample1 months: 19.97
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902506
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902506/suppl/GSM902506_MMRC0206_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902507 | GPL570 |
|
MMRC0359_1_GEP
|
MMRC0359_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 21
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902507
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902507/suppl/GSM902507_MMRC0359_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902508 | GPL570 |
|
MMRC0359_2_GEP
|
MMRC0359_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: 11q13
cyto risk: low
17p13 deletion: no
ploidy: non-hyperdiploid
uams 70gene index: good
copy number abnormalities: 21
time since sample1 months: 1.18
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902508
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902508/suppl/GSM902508_MMRC0359_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902509 | GPL570 |
|
MMRC0395_1_GEP
|
MMRC0395_1 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 1
tc class: D1+D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: poor
copy number abnormalities: 35
time since sample1 months: 0
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902509
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902509/suppl/GSM902509_MMRC0395_1_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
GSM902510 | GPL570 |
|
MMRC0395_2_GEP
|
MMRC0395_2 RNA
|
cell type: CD138 Positive Myeloma Cells
sample order: 2
tc class: D1+D2
cyto risk: low
17p13 deletion: no
ploidy: hyperdiploid
uams 70gene index: good
copy number abnormalities: 36
time since sample1 months: 3.25
|
Single sample standard labeling and hybridization
|
Sample_geo_accession | GSM902510
| Sample_status | Public on Mar 28 2012
| Sample_submission_date | Mar 26 2012
| Sample_last_update_date | Mar 28 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_treatment_protocol_ch1 | CD138 positive tumor cells were isolated from bone marrow aspirates using magnetic sorting, both Miltenyi and Stem Cell Technologies
| Sample_growth_protocol_ch1 | Bone marrow aspirates were attained from patients after they signed informed consent documetnation
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | RNA was extracted from cells using TRIzol (Invitrogen) in combination with PureLink Micro-to-Midi RNA columns (Invitrogen) using the manufacturers protocol. RNA samples were tested for purity and concentration on a Nanodrop spectrophotometer and quality checked on an Agilent Bioanalyzer
| Sample_label_ch1 | biotin
| Sample_label_protocol_ch1 | 2 ug of Total RNA was labeled using the One-Cycle Target Labeling kit from Affymetrix as per the manufacturers suggestion
| Sample_hyb_protocol | Labeled cRNA was hybridized to U133Plus2.0 GeneChips in a GeneChip Hybridization Oven 640 and washed using a GeneChip Fluidics Station 450 as per the manufacturers protocol
| Sample_scan_protocol | Arrays were scanned using a GeneChip Scanner 3000 following the recommendations of the manufacturer
| Sample_data_processing | Signal estimates were generated in Expression Console (Affymetrix) using the MAS5 algorithm with default settings
| Sample_platform_id | GPL570
| Sample_contact_name | Jonathan,J,Keats
| Sample_contact_email | jkeats@tgen.org
| Sample_contact_phone | 602-343-8690
| Sample_contact_fax | 602-343-8740
| Sample_contact_laboratory | Multiple Myeloma Research Lab - Keats Lab
| Sample_contact_department | Integrated Cancer Genomics
| Sample_contact_institute | Translational Genomics Research Institute (TGen)
| Sample_contact_address | 445 N. Fifth Street
| Sample_contact_city | Phoenix
| Sample_contact_state | Arizona
| Sample_contact_zip/postal_code | 85004
| Sample_contact_country | Canada
| Sample_contact_web_link | www.tgen.org
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902510/suppl/GSM902510_MMRC0395_2_GEP.CEL.gz
| Sample_series_id | GSE36824
| Sample_series_id | GSE36825
| Sample_data_row_count | 54675
| |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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