Search results for the GEO ID: GSE36830  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM902680 | GPL570 |
|
Control UT-1
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902680
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902680/suppl/GSM902680_Control_UT-1.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902681 | GPL570 |
|
Control UT-2
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902681
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902681/suppl/GSM902681_Control_UT-2.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902682 | GPL570 |
|
Control UT-3
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902682
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902682/suppl/GSM902682_Control_UT-3.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902683 | GPL570 |
|
Control UT-4
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902683
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902683/suppl/GSM902683_Control_UT-4.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902684 | GPL570 |
|
Control UT-5
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902684
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902684/suppl/GSM902684_Control_UT-5.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902685 | GPL570 |
|
Control UT-6
|
Uncinate tissue from control subject
|
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902685
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902685/suppl/GSM902685_Control_UT-6.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902686 | GPL570 |
|
CRSsNP UT-1
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902686
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902686/suppl/GSM902686_CRSsNP_UT-1.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902687 | GPL570 |
|
CRSsNP UT-2
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902687
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902687/suppl/GSM902687_CRSsNP_UT-2.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902688 | GPL570 |
|
CRSsNP UT-3
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902688
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902688/suppl/GSM902688_CRSsNP_UT-3.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902689 | GPL570 |
|
CRSsNP UT-4
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902689
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902689/suppl/GSM902689_CRSsNP_UT-4.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902690 | GPL570 |
|
CRSsNP UT-5
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902690
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902690/suppl/GSM902690_CRSsNP_UT-5.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902691 | GPL570 |
|
CRSsNP UT-6
|
Uncinate tissue from patient with CRSsNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS without nasal polyps (CRSsNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902691
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902691/suppl/GSM902691_CRSsNP_UT-6.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902692 | GPL570 |
|
CRSwNP UT-1
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902692
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902692/suppl/GSM902692_CRSwNP_UT-1.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902693 | GPL570 |
|
CRSwNP UT-2
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902693
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902693/suppl/GSM902693_CRSwNP_UT-2.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902694 | GPL570 |
|
CRSwNP UT-3
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902694
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902694/suppl/GSM902694_CRSwNP_UT-3.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902695 | GPL570 |
|
CRSwNP UT-4
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902695
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902695/suppl/GSM902695_CRSwNP_UT-4.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902696 | GPL570 |
|
CRSwNP UT-5
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902696
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902696/suppl/GSM902696_CRSwNP_UT-5.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902697 | GPL570 |
|
CRSwNP UT-6
|
Uncinate tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: uncinate tissue (UT)
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902697
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902697/suppl/GSM902697_CRSwNP_UT-6.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902698 | GPL570 |
|
CRSwNP polyp-1
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902698
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902698/suppl/GSM902698_CRSwNP_polyp-1.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902699 | GPL570 |
|
CRSwNP polyp-2
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902699
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902699/suppl/GSM902699_CRSwNP_polyp-2.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902700 | GPL570 |
|
CRSwNP polyp-3
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902700
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902700/suppl/GSM902700_CRSwNP_polyp-3.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902701 | GPL570 |
|
CRSwNP polyp-4
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902701
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902701/suppl/GSM902701_CRSwNP_polyp-4.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902702 | GPL570 |
|
CRSwNP polyp-5
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902702
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902702/suppl/GSM902702_CRSwNP_polyp-5.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
GSM902703 | GPL570 |
|
CRSwNP polyp-6
|
Nasal polyp tissue from patient with CRSwNP
|
disease: Chronic rhinosinusitis (CRS)
crs type: CRS with nasal polyps (CRSwNP)
tissue: nasal polyp (NP) tissue
|
Sinonasal and nasal polyp tissues were obtained from routine Functional Endoscopic Sinus Surgery in patients with CRS. Sinus tissues from disease-free control subjects were obtained during endoscopic skull base brain tumor excisions as well as intranasal
|
| Sample_geo_accession | GSM902703
| | Sample_status | Public on Mar 28 2012
| | Sample_submission_date | Mar 27 2012
| | Sample_last_update_date | Mar 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA from sinus tissue was extracted using QIAzol (Qiagen, Valencia, CA) and was cleaned and treated with DNase I using RNeasy according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | NuGEN Ovation RNA Amplification System V2 was used for cDNA amplification and Biotin Labeling Module to prepare cDNA for hybridization (using manufacturer’s protocol).
| | Sample_hyb_protocol | Started from 100ng total RNA, 3.75ug labeled cDNA was hybridized on Affymetrix U133 Plus 2.0 arrays. GeneChips were washed and stained using the Affymetrix Fluidics Station 450.
| | Sample_scan_protocol | GeneChips were scanned on an Affymetrix 7G GeneChip Scanner.
| | Sample_data_processing | Normalized data was generated by GeneSpring software version 7.2 (Agilent). To normalize the variations in staining intensity among chips, the 'Average Difference' values for all genes on a given chip were divided by the median value for expression of all genes on the chip. ABS_CALL was calculated by GeneChip Command Console Software version 3.2 and Average Difference value of microarray was generated by MAS5.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Atsushi,,Kato
| | Sample_contact_email | a-kato@northwestern.edu
| | Sample_contact_phone | 312-503-0086
| | Sample_contact_fax | 312-503-0078
| | Sample_contact_department | Allergy-Immunology Division
| | Sample_contact_institute | Northwestern University Feinberg School of Medicine
| | Sample_contact_address | 240 E. Huron St.
| | Sample_contact_city | Chicago
| | Sample_contact_state | IL
| | Sample_contact_zip/postal_code | 60611
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM902nnn/GSM902703/suppl/GSM902703_CRSwNP_polyp-6.CEL.gz
| | Sample_series_id | GSE36830
| | Sample_data_row_count | 54675
| | |
|
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Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
Enter the group name here: |
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