Search results for the GEO ID: GSE36895 |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM904985 | GPL570 |
|
Normal cortex of patient 14
|
Gene expression profiling of normal cortex of patient 14
|
patient id: 14
tissue: Normal cortex
gender: Female
age: 64
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904985
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904985/suppl/GSM904985_0014N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904986 | GPL570 |
|
ccRCC tumor of patient 14
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 14
|
patient id: 14
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 64
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0M0
Stage: I
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: mutant
vhl status: wild type
|
|
Sample_geo_accession | GSM904986
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904986/suppl/GSM904986_0014T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904988 | GPL570 |
|
Normal cortex of patient 26
|
Gene expression profiling of normal cortex of patient 26
|
patient id: 26
tissue: Normal cortex
gender: Female
age: 77
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904988
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904988/suppl/GSM904988_0026N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904989 | GPL570 |
|
ccRCC tumor of patient 26
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 26
|
patient id: 26
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 77
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T2N0Mx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM904989
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904989/suppl/GSM904989_0026T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904990 | GPL570 |
|
Normal cortex of patient 42
|
Gene expression profiling of normal cortex of patient 42
|
patient id: 42
tissue: Normal cortex
gender: Male
age: 45
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904990
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904990/suppl/GSM904990_0042N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904991 | GPL570 |
|
ccRCC tumor of patient 42
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 42
|
patient id: 42
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 45
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T2N0M0
Stage: II
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM904991
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904991/suppl/GSM904991_0042T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904992 | GPL570 |
|
Normal cortex of patient 75
|
Gene expression profiling of normal cortex of patient 75
|
patient id: 75
tissue: Normal cortex
gender: Female
age: 48
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904992
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904992/suppl/GSM904992_0075N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904994 | GPL570 |
|
ccRCC tumor of patient 75
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 75
|
patient id: 75
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 48
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T2N0M0
Stage: II
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM904994
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904994/suppl/GSM904994_0075T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904995 | GPL570 |
|
Normal cortex of patient 83
|
Gene expression profiling of normal cortex of patient 83
|
patient id: 83
tissue: Normal cortex
gender: Female
age: 85
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904995
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904995/suppl/GSM904995_0083N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904996 | GPL570 |
|
ccRCC tumor of patient 83
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 83
|
patient id: 83
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 85
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0M0
Stage: I
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: loss
vhl status: mutant
|
|
Sample_geo_accession | GSM904996
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904996/suppl/GSM904996_0083T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904998 | GPL570 |
|
Normal cortex of patient 111
|
Gene expression profiling of normal cortex of patient 111
|
patient id: 111
tissue: Normal cortex
gender: Female
age: 72
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904998
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904998/suppl/GSM904998_0111N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM904999 | GPL570 |
|
ccRCC tumor of patient 111
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 111
|
patient id: 111
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 72
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM904999
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM904nnn/GSM904999/suppl/GSM904999_0111T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905000 | GPL570 |
|
Normal cortex of patient 131
|
Gene expression profiling of normal cortex of patient 131
|
patient id: 131
tissue: Normal cortex
gender: Male
age: 51
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905000
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905000/suppl/GSM905000_0131N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905002 | GPL570 |
|
ccRCC tumor of patient 131
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 131
|
patient id: 131
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 51
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905002
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905002/suppl/GSM905002_0131T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905003 | GPL570 |
|
Normal cortex of patient 209
|
Gene expression profiling of normal cortex of patient 209
|
patient id: 209
tissue: Normal cortex
gender: Male
age: 63
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905003
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905003/suppl/GSM905003_0209N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905004 | GPL570 |
|
ccRCC tumor of patient 209
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 209
|
patient id: 209
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 63
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0M0
Stage: I
fuhrman grade: 2
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905004
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905004/suppl/GSM905004_0209T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905006 | GPL570 |
|
Normal cortex of patient 233
|
Gene expression profiling of normal cortex of patient 233
|
patient id: 233
tissue: Normal cortex
gender: Female
age: 79
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905006
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905006/suppl/GSM905006_0233N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905007 | GPL570 |
|
ccRCC tumor of patient 233
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 233
|
patient id: 233
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 79
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0Mx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905007
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905007/suppl/GSM905007_0233T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905008 | GPL570 |
|
Normal cortex of patient 260
|
Gene expression profiling of normal cortex of patient 260
|
patient id: 260
tissue: Normal cortex
gender: Female
age: n/a
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905008
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905008/suppl/GSM905008_0260N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905009 | GPL570 |
|
ccRCC tumor of patient 260
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 260
|
patient id: 260
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: n/a
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0Mx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905009
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905009/suppl/GSM905009_0260T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905011 | GPL570 |
|
Normal cortex of patient 265
|
Gene expression profiling of normal cortex of patient 265
|
patient id: 265
tissue: Normal cortex
gender: Female
age: 43
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905011
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905011/suppl/GSM905011_0265N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905012 | GPL570 |
|
ccRCC tumor of patient 265
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 265
|
patient id: 265
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 43
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0M0
Stage: I
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905012
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905012/suppl/GSM905012_0265T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905013 | GPL570 |
|
Normal cortex of patient 324
|
Gene expression profiling of normal cortex of patient 324
|
patient id: 324
tissue: Normal cortex
gender: Male
age: 60
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905013
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905013/suppl/GSM905013_0324N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905014 | GPL570 |
|
ccRCC tumor of patient 324
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 324
|
patient id: 324
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 60
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905014
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905014/suppl/GSM905014_0324T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905016 | GPL570 |
|
Normal cortex of patient 325
|
Gene expression profiling of normal cortex of patient 325
|
patient id: 325
tissue: Normal cortex
gender: Female
age: 80
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905016
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905016/suppl/GSM905016_0325N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905017 | GPL570 |
|
ccRCC tumor of patient 325
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 325
|
patient id: 325
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 80
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 1
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905017
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905017/suppl/GSM905017_0325T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905018 | GPL570 |
|
Normal cortex of patient 1393
|
Gene expression profiling of normal cortex of patient 1393
|
patient id: 1393
tissue: Normal cortex
gender: Male
age: 83
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905018
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905018/suppl/GSM905018_1393N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905020 | GPL570 |
|
ccRCC tumor of patient 1393
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 1393
|
patient id: 1393
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 83
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 1
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905020
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905020/suppl/GSM905020_1393T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905021 | GPL570 |
|
Normal cortex of patient 1524
|
Gene expression profiling of normal cortex of patient 1524
|
patient id: 1524
tissue: Normal cortex
gender: Male
age: 70
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905021
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905021/suppl/GSM905021_1524N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905022 | GPL570 |
|
ccRCC tumor of patient 1524
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient 1524
|
patient id: 1524
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 70
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxMx
Stage: n/a
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905022
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905022/suppl/GSM905022_1524T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905023 | GPL570 |
|
ccRCC tumor of patient T22
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T22
|
patient id: T22
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 67
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3N0M0
Stage: III
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905023
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905023/suppl/GSM905023_T022T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905024 | GPL570 |
|
ccRCC tumor of patient T26
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T26
|
patient id: T26
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 73
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM1
Stage: IV
fuhrman grade: 4
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905024
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905024/suppl/GSM905024_T026T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905025 | GPL570 |
|
Normal cortex of patient T79
|
Gene expression profiling of normal cortex of patient T79
|
patient id: T79
tissue: Normal cortex
gender: Male
age: 59
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905025
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905025/suppl/GSM905025_T079N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905026 | GPL570 |
|
ccRCC tumor of patient T79
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T79
|
patient id: T79
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 59
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM0
Stage: n/a
fuhrman grade: 4
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905026
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905026/suppl/GSM905026_T079T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905027 | GPL570 |
|
ccRCC tumor of patient T84
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T84
|
patient id: T84
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 52
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T4N1M1
Stage: IV
fuhrman grade: 4
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905027
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905027/suppl/GSM905027_T084T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905028 | GPL570 |
|
Normal cortex of patient T127
|
Gene expression profiling of normal cortex of patient T127
|
patient id: T127
tissue: Normal cortex
gender: Male
age: 35
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905028
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905028/suppl/GSM905028_T127N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905029 | GPL570 |
|
ccRCC tumor of patient T127
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T127
|
patient id: T127
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 35
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM0
Stage: n/a
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905029
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905029/suppl/GSM905029_T127T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905030 | GPL570 |
|
Normal cortex of patient T142
|
Gene expression profiling of normal cortex of patient T142
|
patient id: T142
tissue: Normal cortex
gender: Female
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905030
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905030/suppl/GSM905030_T142N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905031 | GPL570 |
|
ccRCC tumor of patient T142
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T142
|
patient id: T142
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 56
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM0
Stage: n/a
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905031
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905031/suppl/GSM905031_T142T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905032 | GPL570 |
|
ccRCC tumor of patient T143
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T143
|
patient id: T143
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 74
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T4NxM0
Stage: IV
fuhrman grade: 4
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905032
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905032/suppl/GSM905032_T143T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905033 | GPL570 |
|
Normal cortex of patient T144
|
Gene expression profiling of normal cortex of patient T144
|
patient id: T144
tissue: Normal cortex
gender: Male
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905033
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905033/suppl/GSM905033_T144N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905034 | GPL570 |
|
ccRCC tumor of patient T144
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T144
|
patient id: T144
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 74
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T2N1M0
Stage: III
fuhrman grade: 4
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905034
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905034/suppl/GSM905034_T144T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905035 | GPL570 |
|
Normal cortex of patient T158
|
Gene expression profiling of normal cortex of patient T158
|
patient id: T158
tissue: Normal cortex
gender: Female
age: 82
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905035
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905035/suppl/GSM905035_T158N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905036 | GPL570 |
|
ccRCC tumor of patient T158
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T158
|
patient id: T158
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Female
age: 82
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM1
Stage: IV
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905036
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905036/suppl/GSM905036_T158T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905037 | GPL570 |
|
Normal cortex of patient T163
|
Gene expression profiling of normal cortex of patient T163
|
patient id: T163
tissue: Normal cortex
gender: Male
age: 52
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905037
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905037/suppl/GSM905037_T163N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905038 | GPL570 |
|
ccRCC tumor of patient T163
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T163
|
patient id: T163
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 52
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1N0M0
Stage: I
fuhrman grade: 4
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905038
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905038/suppl/GSM905038_T163T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905039 | GPL570 |
|
Normal cortex of patient T164
|
Gene expression profiling of normal cortex of patient T164
|
patient id: T164
tissue: Normal cortex
gender: Male
age: 75
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905039
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905039/suppl/GSM905039_T164N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905040 | GPL570 |
|
ccRCC tumor of patient T164
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T164
|
patient id: T164
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 75
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T4NxM0
Stage: IV
fuhrman grade: 4
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905040
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905040/suppl/GSM905040_T164T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905041 | GPL570 |
|
ccRCC tumor of patient T165
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T165
|
patient id: T165
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 40
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3NxM0
Stage: n/a
fuhrman grade: 3
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905041
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905041/suppl/GSM905041_T165T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905042 | GPL570 |
|
Normal cortex of patient T166
|
Gene expression profiling of normal cortex of patient T166
|
patient id: T166
tissue: Normal cortex
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905042
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905042/suppl/GSM905042_T166N_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905043 | GPL570 |
|
ccRCC tumor of patient T166
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T166
|
patient id: T166
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T3N1M0
Stage: III
fuhrman grade: 4
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905043
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905043/suppl/GSM905043_T166T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905044 | GPL570 |
|
ccRCC tumor of patient T183
|
Gene expression profiling of clear-cell renal cell carcinoma (ccRCC) tumor of patient T183
|
patient id: T183
tissue: Clear-cell renal cell carcinoma (ccRCC) tumor
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
pathologic tnm staging: T1NxM1
Stage: IV
fuhrman grade: 2
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905044
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905044/suppl/GSM905044_T183T_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905045 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T22
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T22
|
patient id: T22
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 67
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905045
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905045/suppl/GSM905045_TG022c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905046 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T26
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T26
|
patient id: T26
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 73
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905046
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905046/suppl/GSM905046_TG026c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905047 | GPL570 |
|
Mouse tumorgraft, cohort 4 of patient T26
|
Gene expression profiling of mouse tumorgraft, cohort 4 of patient T26
|
patient id: T26
tissue: Mouse tumorgraft, cohort 4
gender: Male
age: 73
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905047
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905047/suppl/GSM905047_TG026c4_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905048 | GPL570 |
|
Mouse tumorgraft, cohort 8 of patient T26
|
Gene expression profiling of mouse tumorgraft, cohort 8 of patient T26
|
patient id: T26
tissue: Mouse tumorgraft, cohort 8
gender: Male
age: 73
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905048
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905048/suppl/GSM905048_TG026c8_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905049 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T79
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T79
|
patient id: T79
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 59
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905049
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905049/suppl/GSM905049_TG079c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905050 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T84
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T84
|
patient id: T84
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 52
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905050
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905050/suppl/GSM905050_TG084c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905051 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T127
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T127
|
patient id: T127
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 35
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905051
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905051/suppl/GSM905051_TG127c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905052 | GPL570 |
|
Mouse tumorgraft, cohort 2 of patient T127
|
Gene expression profiling of mouse tumorgraft, cohort 2 of patient T127
|
patient id: T127
tissue: Mouse tumorgraft, cohort 2
gender: Male
age: 35
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905052
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905052/suppl/GSM905052_TG127c2_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905053 | GPL570 |
|
Mouse tumorgraft, cohort 1 of patient T142
|
Gene expression profiling of mouse tumorgraft, cohort 1 of patient T142
|
patient id: T142
tissue: Mouse tumorgraft, cohort 1
gender: Female
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905053
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905053/suppl/GSM905053_TG142c1_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905054 | GPL570 |
|
Mouse tumorgraft, cohort 2 of patient T142
|
Gene expression profiling of mouse tumorgraft, cohort 2 of patient T142
|
patient id: T142
tissue: Mouse tumorgraft, cohort 2
gender: Female
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905054
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905054/suppl/GSM905054_TG142c2_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905055 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T143
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T143
|
patient id: T143
tissue: Mouse tumorgraft, cohort 0
gender: Female
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905055
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905055/suppl/GSM905055_TG143c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905056 | GPL570 |
|
Mouse tumorgraft, cohort 4 of patient T143
|
Gene expression profiling of mouse tumorgraft, cohort 4 of patient T143
|
patient id: T143
tissue: Mouse tumorgraft, cohort 4
gender: Female
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905056
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905056/suppl/GSM905056_TG143c4_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905057 | GPL570 |
|
Mouse tumorgraft, cohort 9 of patient T143
|
Gene expression profiling of mouse tumorgraft, cohort 9 of patient T143
|
patient id: T143
tissue: Mouse tumorgraft, cohort 9
gender: Female
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905057
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905057/suppl/GSM905057_TG143c9_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905058 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T144
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T144
|
patient id: T144
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905058
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905058/suppl/GSM905058_TG144c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905059 | GPL570 |
|
Mouse tumorgraft, cohort 3 of patient T144
|
Gene expression profiling of mouse tumorgraft, cohort 3 of patient T144
|
patient id: T144
tissue: Mouse tumorgraft, cohort 3
gender: Male
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905059
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905059/suppl/GSM905059_TG144c3_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905060 | GPL570 |
|
Mouse tumorgraft, cohort 7 of patient T144
|
Gene expression profiling of mouse tumorgraft, cohort 7 of patient T144
|
patient id: T144
tissue: Mouse tumorgraft, cohort 7
gender: Male
age: 74
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905060
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905060/suppl/GSM905060_TG144c7_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905061 | GPL570 |
|
Mouse tumorgraft, cohort 1 of patient T158
|
Gene expression profiling of mouse tumorgraft, cohort 1 of patient T158
|
patient id: T158
tissue: Mouse tumorgraft, cohort 1
gender: Female
age: 82
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905061
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905061/suppl/GSM905061_TG158c1_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905062 | GPL570 |
|
Mouse tumorgraft, cohort 2 of patient T158
|
Gene expression profiling of mouse tumorgraft, cohort 2 of patient T158
|
patient id: T158
tissue: Mouse tumorgraft, cohort 2
gender: Female
age: 82
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905062
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905062/suppl/GSM905062_TG158c2_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905063 | GPL570 |
|
Mouse tumorgraft, cohort 1 of patient T164
|
Gene expression profiling of mouse tumorgraft, cohort 1 of patient T164
|
patient id: T164
tissue: Mouse tumorgraft, cohort 1
gender: Male
age: 75
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: wild type
vhl status: wild type
|
|
Sample_geo_accession | GSM905063
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905063/suppl/GSM905063_TG164c1_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905064 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T165
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T165
|
patient id: T165
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 40
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905064
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905064/suppl/GSM905064_TG165c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905065 | GPL570 |
|
Mouse tumorgraft, cohort 0 of patient T166
|
Gene expression profiling of mouse tumorgraft, cohort 0 of patient T166
|
patient id: T166
tissue: Mouse tumorgraft, cohort 0
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905065
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905065/suppl/GSM905065_TG166c0_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905066 | GPL570 |
|
Mouse tumorgraft, cohort 4 of patient T166
|
Gene expression profiling of mouse tumorgraft, cohort 4 of patient T166
|
patient id: T166
tissue: Mouse tumorgraft, cohort 4
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905066
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905066/suppl/GSM905066_TG166c4_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905067 | GPL570 |
|
Mouse tumorgraft, cohort 8 of patient T166
|
Gene expression profiling of mouse tumorgraft, cohort 8 of patient T166
|
patient id: T166
tissue: Mouse tumorgraft, cohort 8
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: mutant
pbrm1 status: wild type
vhl status: mutant
|
|
Sample_geo_accession | GSM905067
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905067/suppl/GSM905067_TG166c8_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
| |
|
GSM905068 | GPL570 |
|
Mouse tumorgraft from metastasis, cohort 1 of patient T183
|
Gene expression profiling of mouse tumorgraft from metastasis, cohort 1 of patient T183
|
patient id: T183
tissue: Mouse tumorgraft from metastasis, cohort 1
gender: Male
age: 56
disease state: Clear-cell renal cell carcinoma
bap1 status: wild type
pbrm1 status: mutant
vhl status: mutant
|
|
Sample_geo_accession | GSM905068
| Sample_status | Public on Jun 10 2012
| Sample_submission_date | Mar 28 2012
| Sample_last_update_date | Jun 10 2012
| Sample_type | RNA
| Sample_channel_count | 1
| Sample_organism_ch1 | Homo sapiens
| Sample_taxid_ch1 | 9606
| Sample_molecule_ch1 | total RNA
| Sample_extract_protocol_ch1 | Tissues were homogenized with an RNase-free pestle alternating freeze/thaw cycles and subsequently passed through a QIAshredder column (Qiagen). RNA fraction was extracted using mirVana (Ambion) kit.
| Sample_label_ch1 | Biotin
| Sample_label_protocol_ch1 | RNA was reverse-transcribed and biotin-labeled using Affymetrix one-cycle cDNA synthesis and IVT labeling kits (Affymetrix).
| Sample_hyb_protocol | Arrays were washed and hybridized using Affymetrix Fluidics Station 450.
| Sample_scan_protocol | Arrays were scanned using Affymetrix GeneChip Scanner 3000 7G.
| Sample_data_processing | CEL files were pre-processed and normalized using the RMA algorithm through the Affy package of R/Bioconductor.
| Sample_platform_id | GPL570
| Sample_contact_name | Samuel,,Peña-Llopis
| Sample_contact_email | Samuel.Pena-Llopis@UTSouthwestern.edu, James.Brugarolas@UTSouthwestern.edu
| Sample_contact_phone | (01) 214-648-4099
| Sample_contact_fax | (01) 214-648-1960
| Sample_contact_laboratory | Brugarolas Lab
| Sample_contact_department | Internal Medicine - Oncology Division
| Sample_contact_institute | UT Southwestern Medical Center
| Sample_contact_address | 6000 Harry Hines Blvd., NB5.102
| Sample_contact_city | Dallas
| Sample_contact_state | TX
| Sample_contact_zip/postal_code | 75390-9133
| Sample_contact_country | USA
| Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM905nnn/GSM905068/suppl/GSM905068_TG183Mc1_Exp.CEL.gz
| Sample_series_id | GSE36895
| Sample_data_row_count | 54675
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Make groups for comparisons |
(2 groups will be compared at a time) |
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Select GSMs and click on "Add groups" |
Enter the group name here: |
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