Search results for the GEO ID: GSE37132  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM911905 | GPL570 |
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Colo829 infected with SCR control shRNA
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Colo829 melanoma cells
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cell line: Colo829 melanoma cells
genotype/variation: control
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Scrambled control
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| Sample_geo_accession | GSM911905
| | Sample_status | Public on Apr 28 2012
| | Sample_submission_date | Apr 10 2012
| | Sample_last_update_date | Apr 28 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were lentivirally infected with either SCR control shRNA or independent shRNAs targeting BLNCR1
| | Sample_growth_protocol_ch1 | Colo829 cells were grown in RPMI 1640 medium supplemented with 10% FCS and antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM911nnn/GSM911905/suppl/GSM911905_control.CEL.gz
| | Sample_series_id | GSE37132
| | Sample_series_id | GSE37169
| | Sample_data_row_count | 54675
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GSM911906 | GPL570 |
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Colo829 infected with BANCR shRNA 1
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Colo829 melanoma cells
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cell line: Colo829 melanoma cells
genotype/variation: BANCR knockdown
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shRNA 1
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| Sample_geo_accession | GSM911906
| | Sample_status | Public on Apr 28 2012
| | Sample_submission_date | Apr 10 2012
| | Sample_last_update_date | May 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were lentivirally infected with either SCR control shRNA or independent shRNAs targeting BANCR
| | Sample_growth_protocol_ch1 | Colo829 cells were grown in RPMI 1640 medium supplemented with 10% FCS and antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM911nnn/GSM911906/suppl/GSM911906_bancri_1.CEL.gz
| | Sample_series_id | GSE37132
| | Sample_series_id | GSE37169
| | Sample_data_row_count | 54675
| | |
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GSM911907 | GPL570 |
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Colo829 infected with BANCR shRNA 2
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Colo829 melanoma cells
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cell line: Colo829 melanoma cells
genotype/variation: BANCR knockdown
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shRNA 2
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| Sample_geo_accession | GSM911907
| | Sample_status | Public on Apr 28 2012
| | Sample_submission_date | Apr 10 2012
| | Sample_last_update_date | May 21 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were lentivirally infected with either SCR control shRNA or independent shRNAs targeting BANCR
| | Sample_growth_protocol_ch1 | Colo829 cells were grown in RPMI 1640 medium supplemented with 10% FCS and antibiotics
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen RNeasy kits were used to isolate total RNA.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Affymetrix 3' IVT Express Kit
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization, Wash, and Stain Kit
| | Sample_scan_protocol | Affymetrix GeneChip Scanner 3000 7G
| | Sample_data_processing | RMA normalization using justRMA package in R 2.11.1
| | Sample_platform_id | GPL570
| | Sample_contact_name | Kun,,Qu
| | Sample_contact_email | kqu@stanford.edu
| | Sample_contact_phone | 650-725-2926
| | Sample_contact_laboratory | Paul Khavari
| | Sample_contact_department | Dermatology
| | Sample_contact_institute | Stanford University
| | Sample_contact_address | 269 Campus Dr. CCSR Room 2150
| | Sample_contact_city | Stanford
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 94305
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM911nnn/GSM911907/suppl/GSM911907_bancri_2.CEL.gz
| | Sample_series_id | GSE37132
| | Sample_series_id | GSE37169
| | Sample_data_row_count | 54675
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