Search results for the GEO ID: GSE37168  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM912717 | GPL570 |
|
P88-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P88
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912717
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912717/suppl/GSM912717_CW2011052736.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912718 | GPL570 |
|
P88-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FCR, Cam+R
time point: at relapse
disease progression: progressor
individual: P88
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912718
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912718/suppl/GSM912718_CW2011090851.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912719 | GPL570 |
|
P14-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P14
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912719
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912719/suppl/GSM912719_JB2009071012.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912720 | GPL570 |
|
P14-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P14
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912720
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912720/suppl/GSM912720_CW2011052708.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912721 | GPL570 |
|
P14-sample2(dup) at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P14
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912721
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912721/suppl/GSM912721_CW2011090872.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912722 | GPL570 |
|
P39-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P39
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912722
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912722/suppl/GSM912722_JB2009091015.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912723 | GPL570 |
|
P39-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P39
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912723
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912723/suppl/GSM912723_CW2011052711.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912724 | GPL570 |
|
P40-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P40
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912724
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912724/suppl/GSM912724_JB2009052239.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912725 | GPL570 |
|
P40-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FCR, Cam+R
time point: at relapse
disease progression: progressor
individual: P40
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912725
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912725/suppl/GSM912725_CW2011090859.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912726 | GPL570 |
|
P65-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P65
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912726
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912726/suppl/GSM912726_JB2009021973.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912727 | GPL570 |
|
P65-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): Cam+R
time point: at relapse
disease progression: progressor
individual: P65
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912727
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912727/suppl/GSM912727_CW2011090860.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912728 | GPL570 |
|
P65-sample2(dup) at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): Cam+R
time point: at relapse
disease progression: progressor
individual: P65
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912728
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912728/suppl/GSM912728_CW2011052707.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912729 | GPL570 |
|
P66-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P66
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912729
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912729/suppl/GSM912729_JB2009052238.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912730 | GPL570 |
|
P66-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR, Chlor.
time point: at relapse
disease progression: progressor
individual: P66
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912730
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912730/suppl/GSM912730_CW2011090861.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912732 | GPL570 |
|
P66-sample2(dup2) at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR, Chlor.
time point: at relapse
disease progression: progressor
individual: P66
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912732
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912732/suppl/GSM912732_CW2011052710.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912733 | GPL570 |
|
P20-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P20
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912733
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912733/suppl/GSM912733_CW2011031014.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912734 | GPL570 |
|
P20-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR, Cam+R
time point: at relapse
disease progression: progressor
individual: P20
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912734
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912734/suppl/GSM912734_CW2011052738.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912735 | GPL570 |
|
P6-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P6
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912735
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912735/suppl/GSM912735_JB2009071006.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912736 | GPL570 |
|
P6-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR, Chlor.
time point: at relapse
disease progression: progressor
individual: P6
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912736
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912736/suppl/GSM912736_CW2011090850.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912737 | GPL570 |
|
P95-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P95
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912737
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912737/suppl/GSM912737_CW2011090862.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912738 | GPL570 |
|
P95-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P95
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912738
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912738/suppl/GSM912738_CW2011090863.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912739 | GPL570 |
|
P93-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P93
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912739
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912739/suppl/GSM912739_CW2011090864.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912740 | GPL570 |
|
P93-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P93
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912740
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912740/suppl/GSM912740_CW2011090865.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912741 | GPL570 |
|
P94-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P94
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912741
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912741/suppl/GSM912741_JB2009071027.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912742 | GPL570 |
|
P94-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FR
time point: at relapse
disease progression: progressor
individual: P94
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912742
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912742/suppl/GSM912742_CW2011090869.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912743 | GPL570 |
|
P30-sample1 longitudinal time 1 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 1
disease progression: non-progressor
individual: P30
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912743
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912743/suppl/GSM912743_CW2011031025.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912744 | GPL570 |
|
P30-sample2 longitudinal time 2 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 2
disease progression: non-progressor
individual: P30
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912744
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912744/suppl/GSM912744_CW2011090871.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912745 | GPL570 |
|
P19-sample1 longitudinal time 1 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 1
disease progression: non-progressor
individual: P19
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912745
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912745/suppl/GSM912745_JB2009071010.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912746 | GPL570 |
|
P19-sample2 longitudinal time 2 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 2
disease progression: non-progressor
individual: P19
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912746
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912746/suppl/GSM912746_CW2011090854.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912747 | GPL570 |
|
P82-sample1 longitudinal time 1 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 1
disease progression: non-progressor
individual: P82
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912747
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912747/suppl/GSM912747_JB2009071040.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912748 | GPL570 |
|
P82-sample2 longitudinal time 2 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 2
disease progression: non-progressor
individual: P82
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912748
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912748/suppl/GSM912748_CW2011090855.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912749 | GPL570 |
|
P71-sample1 longitudinal time 1 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 1
disease progression: non-progressor
individual: P71
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912749
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912749/suppl/GSM912749_JB2009052215.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912750 | GPL570 |
|
P71-sample2 longitudinal time 2 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 2
disease progression: non-progressor
individual: P71
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912750
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912750/suppl/GSM912750_CW2011090856.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912751 | GPL570 |
|
P11-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P11
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912751
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912751/suppl/GSM912751_JB2009052225.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912752 | GPL570 |
|
P11-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FCR
time point: at relapse
disease progression: progressor
individual: P11
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912752
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912752/suppl/GSM912752_CW2011090867.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912753 | GPL570 |
|
P92-sample1 before treatment progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
time point: before treatment
disease progression: progressor
individual: P92
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912753
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912753/suppl/GSM912753_JB2009071018.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912754 | GPL570 |
|
P92-sample2 at relapse progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): FCR
time point: at relapse
disease progression: progressor
individual: P92
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912754
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912754/suppl/GSM912754_CW2011090868.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912755 | GPL570 |
|
P18-sample2 longitudinal time 2 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 2
disease progression: non-progressor
individual: P18
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912755
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912755/suppl/GSM912755_CW2011031020.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
GSM912756 | GPL570 |
|
P18-sample1 longitudinal time 1 non-progressor
|
leukemia cells
|
disease state: chronic lymphocytic leukemia
tissue: blood
intervening therapy (f- fludarabine, c-cyclophosphamide, r- rituximab, cam. -campath/alemtuzumab, chlor. - chlorambucil): None
time point: longitudinal time 1
disease progression: non-progressor
individual: P18
|
Sequential sampling of CLL cells
Gene expression data from CLL tumors
|
| Sample_geo_accession | GSM912756
| | Sample_status | Public on Feb 21 2013
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Feb 21 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells were not treated but rather thawed and processed immediately
| | Sample_growth_protocol_ch1 | No growth, freshly isolated from peripheral blood, or after thawing.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA were extracted using Trizol and further purified by RNeasy kit from Qiagen
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Samples were enzymatically fragmented and end-labled with a biotinylated nucleotide analog
| | Sample_hyb_protocol | Samples were hybridized to a microarray chip overnight at 45 degree in a solution containg several biotinylated control oligonucleotides
| | Sample_scan_protocol | Affymetrix Gene ChIP Scanner 3000 7G
| | Sample_data_processing | All expression profiles were processed using RMA, and Combat implemented by the PreprocessDataset module in GenePattern
| | Sample_platform_id | GPL570
| | Sample_contact_name | Dan,A,Landau
| | Sample_contact_email | dana_landau@dfci.harvard.edu
| | Sample_contact_department | Medical Oncology
| | Sample_contact_institute | DFCI
| | Sample_contact_address | 77 Avenue Louis Pasteur
| | Sample_contact_city | Boston
| | Sample_contact_state | MA
| | Sample_contact_zip/postal_code | 02115
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM912nnn/GSM912756/suppl/GSM912756_CW2011090853.CEL.gz
| | Sample_series_id | GSE37168
| | Sample_data_row_count | 54675
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
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