Search results for the GEO ID: GSE37185  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM913309 | GPL3921 |
|
BT549-transfected with LNA-antimiR-1204
|
BT549-transfected with LNA-antimiR-1204
|
tissue: Breast
group: Case
cell line: BT549
transfection: LNA-antimiR-1204
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913309
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-1204 at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913309/suppl/GSM913309_5500014037495121008419_HTA41_Image.A07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913310 | GPL3921 |
|
BT549-transfected with LNA-antimiR-control
|
BT549-transfected with LNA-antimiR-control
|
tissue: Breast
group: Control
cell line: BT549
transfection: LNA-antimiR-control
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913310
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-control at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913310/suppl/GSM913310_5500014037495121008419_HTA41_Image.B07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913311 | GPL3921 |
|
HEY-transfected with LNA-antimiR-1204
|
HEY-transfected with LNA-antimiR-1204
|
tissue: Ovary
group: Case
cell line: HEY
transfection: LNA-antimiR-1204
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913311
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-1204 at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913311/suppl/GSM913311_5500014037495121008419_HTA41_Image.C07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913312 | GPL3921 |
|
HEY-transfected with LNA-antimiR-control
|
HEY-transfected with LNA-antimiR-control
|
tissue: Ovary
group: Control
cell line: HEY
transfection: LNA-antimiR-control
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913312
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-control at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913312/suppl/GSM913312_5500014037495121008419_HTA41_Image.D07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913313 | GPL3921 |
|
MDAMB231-transfected with LNA-antimiR-1204
|
MDAMB231-transfected with LNA-antimiR-1204
|
tissue: Breast
group: Case
cell line: MDAMB231
transfection: LNA-antimiR-1204
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913313
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-1204 at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | DMEM,10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913313/suppl/GSM913313_5500014037495121008419_HTA41_Image.E07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913314 | GPL3921 |
|
MDAMB231-transfected with LNA-antimiR-control
|
MDAMB231-transfected with LNA-antimiR-control
|
tissue: Breast
group: Control
cell line: MDAMB231
transfection: LNA-antimiR-control
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913314
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-control at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | DMEM,10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913314/suppl/GSM913314_5500014037495121008419_HTA41_Image.F07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913315 | GPL3921 |
|
OV90-transfected with miR-1204 mimic
|
OV90-transfected with miR-1204 mimic
|
tissue: Ovary
group: Case
cell line: OV90
transfection: miR-1204 mimic
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913315
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with miR-1204 mimic at a final concentration of 50nM.
| | Sample_growth_protocol_ch1 | MCDB: M199 (1:1), 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913315/suppl/GSM913315_5500014037495121008419_HTA41_Image.G07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913316 | GPL3921 |
|
OV90-transfected with miR-1204 control
|
OV90-transfected with miR-1204 control
|
tissue: Ovary
group: Control
cell line: OV90
transfection: miR-1204 control
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913316
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with mimic control at a final concentration of 50nM.
| | Sample_growth_protocol_ch1 | MCDB: M199 (1:1), 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913316/suppl/GSM913316_5500014037495121008419_HTA41_Image.H07.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913317 | GPL3921 |
|
OVCAR8-transfected with LNA-antimiR-1204
|
OVCAR8-transfected with LNA-antimiR-1204
|
tissue: Ovary
group: Case
cell line: OVCAR8
transfection: LNA-antimiR-1204
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913317
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-1204 at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913317/suppl/GSM913317_5500014037495121008419_HTA41_Image.A09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913318 | GPL3921 |
|
OVCAR8-transfected with LNA-antimiR-control
|
OVCAR8-transfected with LNA-antimiR-control
|
tissue: Ovary
group: Control
cell line: OVCAR8
transfection: LNA-antimiR-control
|
Cell line derived from ovarian carcinoma
|
| Sample_geo_accession | GSM913318
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-control at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | RPMI, 10% FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913318/suppl/GSM913318_5500014037495121008419_HTA41_Image.B09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913319 | GPL3921 |
|
SKBR3-transfected with miR-1204 mimic
|
SKBR3-transfected with miR-1204 mimic
|
tissue: Breast
group: Case
cell line: SKBR3
transfection: miR-1204 mimic
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913319
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with miR-1204 mimic at a final concentration of 50nM.
| | Sample_growth_protocol_ch1 | McCoy,10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913319/suppl/GSM913319_5500014037495121008419_HTA41_Image.C09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913320 | GPL3921 |
|
SKBR3-transfected with mimic control
|
SKBR3-transfected with mimic control
|
tissue: Breast
group: Control
cell line: SKBR3
transfection: miR-1204 control
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913320
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with mimic control at a final concentration of 50nM.
| | Sample_growth_protocol_ch1 | McCoy,10%FBS
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913320/suppl/GSM913320_5500014037495121008419_HTA41_Image.D09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913321 | GPL3921 |
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SUM159PT-transfected with LNA-antimiR-1204
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SUM159PT-transfected with LNA-antimiR-1204
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tissue: Breast
group: Case
cell line: SUM159PT
transfection: LNA-antimiR-1204
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Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913321
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-1204 at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | Ham's F12 + 5 % FBS + Insulin (5 ug/ml) + Hydrocortisone (1 ug/ml) + HEPES (10 mM)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913321/suppl/GSM913321_5500014037495121008419_HTA41_Image.E09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
|
GSM913322 | GPL3921 |
|
SUM159PT-transfected with LNA-antimiR-control
|
SUM159PT-transfected with LNA-antimiR-control
|
tissue: Breast
group: Control
cell line: SUM159PT
transfection: LNA-antimiR-control
|
Cell line derived from breast carcinoma
|
| Sample_geo_accession | GSM913322
| | Sample_status | Public on May 01 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | May 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Cells transfected with LNA-antimiR-control at final concentration of 50nM with Lipofectamine 2000.
| | Sample_growth_protocol_ch1 | Ham's F12 + 5 % FBS + Insulin (5 ug/ml) + Hydrocortisone (1 ug/ml) + HEPES (10 mM)
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was harvested 24 h post-transfection using RNeasy mini kit (Qiagen, Valencia, CA, USA).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Samples were prepared according to the standard Affymetrix protocol from 3 ug total RNA
| | Sample_hyb_protocol | RNA was hybridized using the Affymetrix standard protocol
| | Sample_scan_protocol | Affymetrix standard protocol
| | Sample_data_processing | The GenePattern suite of tools was employed to visualize the arrays and mask any visible smudges. Probe set based gene expression measurements were normalized using the RMA algorithm in Genepattern (http://www.broad.mit.edu/cancer/software/genepattern/).
| | Sample_platform_id | GPL3921
| | Sample_contact_name | Laura,M.,Heiser
| | Sample_contact_email | heiserl@ohsu.edu
| | Sample_contact_institute | OHSU
| | Sample_contact_address | 3181 SW Sam Jackson Park Rd.
| | Sample_contact_city | Portland
| | Sample_contact_state | OR
| | Sample_contact_zip/postal_code | 97239
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913322/suppl/GSM913322_5500014037495121008419_HTA41_Image.F09.CEL.gz
| | Sample_series_id | GSE37185
| | Sample_data_row_count | 22277
| | |
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