Search results for the GEO ID: GSE37194  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM913350 | GPL1261 |
|
thoracic aorta from non-transgenic littermate, replicate 1
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thoracic aorta
|
tissue: thoracic aorta
genotype: non-transgenic
strain: C57BL/6
|
thoracic aorta from mulitple mice, pooled
|
| Sample_geo_accession | GSM913350
| | Sample_status | Public on Oct 03 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Oct 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA) and was purified using a column-based procedure following a standard protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A one-step amplification and labeling procedure (Affymetrix) starting with approximately 3-5 ug of total RNA was used to generate biotin-labeled RNA fragments.
| | Sample_hyb_protocol | The hybridization procedures were performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_scan_protocol | The scanning of the arrays was performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_data_processing | Affymetrix Power Tools (APT, release apt-1.12.0) was used to process the microarray data files (i.e., *.CEL files) and to normalize the data according to the RMA (robust multiarray average) algorithm to generate gene-level (i.e., transcript) signal values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Henry,,Keen
| | Sample_contact_email | henry-keen@uiowa.edu
| | Sample_contact_phone | 319-335-8926
| | Sample_contact_laboratory | Dr. Curt D. Sigmund's Laboratory
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | University of Iowa
| | Sample_contact_address | 3181 MERF
| | Sample_contact_city | Iowa City
| | Sample_contact_state | IA
| | Sample_contact_zip/postal_code | 52242
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913350/suppl/GSM913350_AORTA_NT_1.CEL.gz
| | Sample_series_id | GSE37194
| | Sample_series_id | GSE37196
| | Sample_data_row_count | 45101
| | |
|
GSM913351 | GPL1261 |
|
thoracic aorta from non-transgenic littermate, replicate 2
|
thoracic aorta
|
tissue: thoracic aorta
genotype: non-transgenic
strain: C57BL/6
|
thoracic aorta from mulitple mice, pooled
|
| Sample_geo_accession | GSM913351
| | Sample_status | Public on Oct 03 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Oct 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA) and was purified using a column-based procedure following a standard protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A one-step amplification and labeling procedure (Affymetrix) starting with approximately 3-5 ug of total RNA was used to generate biotin-labeled RNA fragments.
| | Sample_hyb_protocol | The hybridization procedures were performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_scan_protocol | The scanning of the arrays was performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_data_processing | Affymetrix Power Tools (APT, release apt-1.12.0) was used to process the microarray data files (i.e., *.CEL files) and to normalize the data according to the RMA (robust multiarray average) algorithm to generate gene-level (i.e., transcript) signal values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Henry,,Keen
| | Sample_contact_email | henry-keen@uiowa.edu
| | Sample_contact_phone | 319-335-8926
| | Sample_contact_laboratory | Dr. Curt D. Sigmund's Laboratory
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | University of Iowa
| | Sample_contact_address | 3181 MERF
| | Sample_contact_city | Iowa City
| | Sample_contact_state | IA
| | Sample_contact_zip/postal_code | 52242
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913351/suppl/GSM913351_AORTA_NT_2.CEL.gz
| | Sample_series_id | GSE37194
| | Sample_series_id | GSE37196
| | Sample_data_row_count | 45101
| | |
|
GSM913352 | GPL1261 |
|
thoracic aorta from transgenic mouse with DN PPAR gamma (P467L mutation) targeted to vascular smooth muscle, replicate 1
|
thoracic aorta
|
tissue: thoracic aorta
genotype: PPAR gamma P467L
strain: C57BL/6
|
thoracic aorta from mulitple mice, pooled
|
| Sample_geo_accession | GSM913352
| | Sample_status | Public on Oct 03 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Oct 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA) and was purified using a column-based procedure following a standard protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A one-step amplification and labeling procedure (Affymetrix) starting with approximately 3-5 ug of total RNA was used to generate biotin-labeled RNA fragments.
| | Sample_hyb_protocol | The hybridization procedures were performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_scan_protocol | The scanning of the arrays was performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_data_processing | Affymetrix Power Tools (APT, release apt-1.12.0) was used to process the microarray data files (i.e., *.CEL files) and to normalize the data according to the RMA (robust multiarray average) algorithm to generate gene-level (i.e., transcript) signal values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Henry,,Keen
| | Sample_contact_email | henry-keen@uiowa.edu
| | Sample_contact_phone | 319-335-8926
| | Sample_contact_laboratory | Dr. Curt D. Sigmund's Laboratory
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | University of Iowa
| | Sample_contact_address | 3181 MERF
| | Sample_contact_city | Iowa City
| | Sample_contact_state | IA
| | Sample_contact_zip/postal_code | 52242
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913352/suppl/GSM913352_AORTA_SP467L_1.CEL.gz
| | Sample_series_id | GSE37194
| | Sample_series_id | GSE37196
| | Sample_data_row_count | 45101
| | |
|
GSM913353 | GPL1261 |
|
thoracic aorta from transgenic mouse with DN PPAR gamma (P467L mutation) targeted to vascular smooth muscle, replicate 2
|
thoracic aorta
|
tissue: thoracic aorta
genotype: PPAR gamma P467L
strain: C57BL/6
|
thoracic aorta from mulitple mice, pooled
|
| Sample_geo_accession | GSM913353
| | Sample_status | Public on Oct 03 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Oct 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA) and was purified using a column-based procedure following a standard protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A one-step amplification and labeling procedure (Affymetrix) starting with approximately 3-5 ug of total RNA was used to generate biotin-labeled RNA fragments.
| | Sample_hyb_protocol | The hybridization procedures were performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_scan_protocol | The scanning of the arrays was performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_data_processing | Affymetrix Power Tools (APT, release apt-1.12.0) was used to process the microarray data files (i.e., *.CEL files) and to normalize the data according to the RMA (robust multiarray average) algorithm to generate gene-level (i.e., transcript) signal values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Henry,,Keen
| | Sample_contact_email | henry-keen@uiowa.edu
| | Sample_contact_phone | 319-335-8926
| | Sample_contact_laboratory | Dr. Curt D. Sigmund's Laboratory
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | University of Iowa
| | Sample_contact_address | 3181 MERF
| | Sample_contact_city | Iowa City
| | Sample_contact_state | IA
| | Sample_contact_zip/postal_code | 52242
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913353/suppl/GSM913353_AORTA_SP467L_2.CEL.gz
| | Sample_series_id | GSE37194
| | Sample_series_id | GSE37196
| | Sample_data_row_count | 45101
| | |
|
GSM913354 | GPL1261 |
|
thoracic aorta from transgenic mouse with DN PPAR gamma (P467L mutation) targeted to vascular smooth muscle, replicate 3
|
thoracic aorta
|
tissue: thoracic aorta
genotype: PPAR gamma P467L
strain: C57BL/6
|
thoracic aorta from mulitple mice, pooled
|
| Sample_geo_accession | GSM913354
| | Sample_status | Public on Oct 03 2012
| | Sample_submission_date | Apr 11 2012
| | Sample_last_update_date | Oct 04 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Trizol reagent (Invitrogen, Carlsbad, CA) and was purified using a column-based procedure following a standard protocol.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | A one-step amplification and labeling procedure (Affymetrix) starting with approximately 3-5 ug of total RNA was used to generate biotin-labeled RNA fragments.
| | Sample_hyb_protocol | The hybridization procedures were performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_scan_protocol | The scanning of the arrays was performed at the University of Iowa DNA Core facility using protocols recommended by the manufacturer (Affymetrix).
| | Sample_data_processing | Affymetrix Power Tools (APT, release apt-1.12.0) was used to process the microarray data files (i.e., *.CEL files) and to normalize the data according to the RMA (robust multiarray average) algorithm to generate gene-level (i.e., transcript) signal values.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Henry,,Keen
| | Sample_contact_email | henry-keen@uiowa.edu
| | Sample_contact_phone | 319-335-8926
| | Sample_contact_laboratory | Dr. Curt D. Sigmund's Laboratory
| | Sample_contact_department | Internal Medicine
| | Sample_contact_institute | University of Iowa
| | Sample_contact_address | 3181 MERF
| | Sample_contact_city | Iowa City
| | Sample_contact_state | IA
| | Sample_contact_zip/postal_code | 52242
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM913nnn/GSM913354/suppl/GSM913354_AORTA_SP467L_3.CEL.gz
| | Sample_series_id | GSE37194
| | Sample_series_id | GSE37196
| | Sample_data_row_count | 45101
| | |
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