Search results for the GEO ID: GSE3769  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM86502 | GPL96 |
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Human myoblasts, chip HG-U133A
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Myoblasts, Muscle
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Defining markers: Desmin, NKH1
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This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Jacques P. Tremblay (jacques-p.tremblay@crchul.ulaval.ca; 2705 boulevard Laurier) for analysis.
Stembase Experiment ID: E28
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28
SCGP Sample ID: S30
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28#SAMPLE_28
Short description: Human myoblasts
Estimated purity: 95%
RNA concentration: 3.0 ug/ul
Sample volume: 8.0 ul
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| Sample_geo_accession | GSM86502
| | Sample_status | Public on Dec 09 2005
| | Sample_submission_date | Dec 07 2005
| | Sample_last_update_date | Jan 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: TRIzol
| | Sample_extract_protocol_ch1 | Cell purification method: Primary culture of muscle-derived cells
| | Sample_extract_protocol_ch1 | Contaminating cell type: Fibroblasts
| | Sample_extract_protocol_ch1 | Method for estimating purity: Immunohistochemistry, FACS
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
| | Sample_platform_id | GPL96
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM86nnn/GSM86502/suppl/GSM86502.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM86nnn/GSM86502/suppl/GSM86502.EXP.gz
| | Sample_series_id | GSE3769
| | Sample_data_row_count | 22283
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GSM86503 | GPL96 |
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PP6, chip HG-U133A
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Muscle stem cell, Muscle
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Strain:
|
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Jacques P. Tremblay (jacques-p.tremblay@crchul.ulaval.ca; 2705 boulevard Laurier) for analysis.
Stembase Experiment ID: E28
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28
SCGP Sample ID: S31
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=28#SAMPLE_29
Short description: PP6: human muscle derived stem cell
RNA concentration: 0.9 ug/ul
Sample volume: 8.0 ul
|
| Sample_geo_accession | GSM86503
| | Sample_status | Public on Dec 09 2005
| | Sample_submission_date | Dec 07 2005
| | Sample_last_update_date | Jan 19 2006
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_growth_protocol_ch1 | Growth medium: F10
| | Sample_growth_protocol_ch1 | Media supplements: 10% SVF, 9mM glutamine
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | RNA prep method: TRIzol
| | Sample_extract_protocol_ch1 | Cell purification method: After 24 hours of culture, floating cells were collected and plated on new flasks, serial preplates were obtained until pp6.
| | Sample_label_ch1 | Biotin
| | Sample_data_processing | Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06
| | Sample_platform_id | GPL96
| | Sample_contact_name | Carol,,Perez-Iratxeta
| | Sample_contact_email | cpereziratxeta@gmail.com
| | Sample_contact_phone | (613) 737-8899 -73255
| | Sample_contact_fax | (613) 737-8023
| | Sample_contact_laboratory | Cellular and Molecular Medicine, Bioinformatics
| | Sample_contact_department | Ottawa Health Research Institute
| | Sample_contact_institute | Ontario Genomics Innovation Centre (OGIC)
| | Sample_contact_address | 501 Smyth Rd.
| | Sample_contact_city | Ottawa
| | Sample_contact_state | ON
| | Sample_contact_zip/postal_code | K1H 8L6
| | Sample_contact_country | Canada
| | Sample_contact_web_link | http://www.ohri.ca
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM86nnn/GSM86503/suppl/GSM86503.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM86nnn/GSM86503/suppl/GSM86503.EXP.gz
| | Sample_series_id | GSE3769
| | Sample_data_row_count | 22283
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