Search results for the GEO ID: GSE37775  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM928133 | GPL1261 |
|
WT ES cells (Men1), rep1
|
TC1 Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Wild-type
cell type: ES cell
|
|
| Sample_geo_accession | GSM928133
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928133/suppl/GSM928133_WT-ESC-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928133/suppl/GSM928133_WT-ESC-1.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928134 | GPL1261 |
|
WT ES Cells (Men1), rep2
|
TC1 Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Wild-type
cell type: ES cell
|
|
| Sample_geo_accession | GSM928134
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928134/suppl/GSM928134_WT-ESC-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928134/suppl/GSM928134_WT-ESC-2.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928135 | GPL1261 |
|
Men1-KO ES cells, rep1
|
3.2N Menin-null Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Men1-KO
cell type: ES cell
|
|
| Sample_geo_accession | GSM928135
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928135/suppl/GSM928135_KO-ESC-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928135/suppl/GSM928135_KO-ESC-1.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928136 | GPL1261 |
|
Men1-KO ES cells, rep2
|
3.2N Menin-null Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Men1-KO
cell type: ES cell
|
|
| Sample_geo_accession | GSM928136
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928136/suppl/GSM928136_KO-ESC-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928136/suppl/GSM928136_KO-ESC-2.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928137 | GPL1261 |
|
WT PILECs, rep1
|
TC1 Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Wild-type
cell type: ES cells were differentiated into pancreatic islet-like endocrine cells (PILECs)
|
|
| Sample_geo_accession | GSM928137
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928137/suppl/GSM928137_WT-PILEC-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928137/suppl/GSM928137_WT-PILEC-1.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928138 | GPL1261 |
|
WT PILECs, rep2
|
TC1 Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Wild-type
cell type: ES cells were differentiated into pancreatic islet-like endocrine cells (PILECs)
|
|
| Sample_geo_accession | GSM928138
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928138/suppl/GSM928138_WT-PILEC-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928138/suppl/GSM928138_WT-PILEC-2.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928139 | GPL1261 |
|
Men1-KO PILECs, rep1
|
3.2N Menin-null Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Men1-KO
cell type: ES cells were differentiated into pancreatic islet-like endocrine cells (PILECs)
|
|
| Sample_geo_accession | GSM928139
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928139/suppl/GSM928139_KO-PILEC-1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928139/suppl/GSM928139_KO-PILEC-1.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
| | |
|
GSM928140 | GPL1261 |
|
Men1-KO PILECs, rep2
|
3.2N Menin-null Embryonic Stem Cells
|
genetic background: 129S6/SvEvTac
genotype: Men1-KO
cell type: ES cells were differentiated into pancreatic islet-like endocrine cells (PILECs)
|
|
| Sample_geo_accession | GSM928140
| | Sample_status | Public on Jun 01 2012
| | Sample_submission_date | May 04 2012
| | Sample_last_update_date | Jun 01 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using RNAeasy kit (Qiagen)
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | RMA by software Partek
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Raja,,Jothi
| | Sample_contact_email | jothi@mail.nih.gov
| | Sample_contact_laboratory | Systems Biology
| | Sample_contact_department | National Institute of Environmental Health Sciences
| | Sample_contact_institute | National Institutes of Health
| | Sample_contact_address | 111 TW Alexander Drive; A314
| | Sample_contact_city | RTP
| | Sample_contact_state | NC
| | Sample_contact_zip/postal_code | 27709
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928140/suppl/GSM928140_KO-PILEC-2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928140/suppl/GSM928140_KO-PILEC-2.CHP.gz
| | Sample_series_id | GSE37775
| | Sample_series_id | GSE37776
| | Sample_data_row_count | 45101
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