Search results for the GEO ID: GSE37791  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM928277 | GPL1261 |
|
RFP;TTP-GFP-, technical replicate 1
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RFP;TTP-GFP-
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP-
facs sorted for: dsRed2+ and TTP-GFP-
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928277
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928277/suppl/GSM928277_RR3_1_1_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
| | |
|
GSM928278 | GPL1261 |
|
RFP;TTP-GFP-, technical replicate 2
|
RFP;TTP-GFP-
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP-
facs sorted for: dsRed2+ and TTP-GFP-
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928278
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928278/suppl/GSM928278_RR3_1_2_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
| | |
|
GSM928279 | GPL1261 |
|
RFP;TTP-GFP-, technical replicate 3
|
RFP;TTP-GFP-
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP-
facs sorted for: dsRed2+ and TTP-GFP-
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928279
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928279/suppl/GSM928279_RR3_1_3_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
| | |
|
GSM928280 | GPL1261 |
|
RFP;TTP-GFP+, technical replicate 1
|
RFP;TTP-GFP+
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP+
facs sorted for: dsRed2+ and TTP-GFP+
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928280
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928280/suppl/GSM928280_RR3_2_1_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
| | |
|
GSM928281 | GPL1261 |
|
RFP;TTP-GFP+, technical replicate 2
|
RFP;TTP-GFP+
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP+
facs sorted for: dsRed2+ and TTP-GFP+
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928281
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928281/suppl/GSM928281_RR3_2_2_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
| | |
|
GSM928282 | GPL1261 |
|
RFP;TTP-GFP+, technical replicate 3
|
RFP;TTP-GFP+
|
source tissue type: Ex vivo Eμ-Myc lymphoma
sequentially infected with: MSCV-I-dsRed2 (RFP) and MSCV-TTP-I-GFP
genotype/variation: MSCV-I-dsRed2+; MSCV-TTP-I-GFP+
facs sorted for: dsRed2+ and TTP-GFP+
|
Gene expression data of retrovirally infected ex vivo lymphoma cells
|
| Sample_geo_accession | GSM928282
| | Sample_status | Public on Aug 02 2012
| | Sample_submission_date | May 05 2012
| | Sample_last_update_date | Aug 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Sequential retrovirally infected ex vivo Eμ-Myc lymphoma cells were separated by FACS based on RFP and GFP expression. RNA was prepared using the NucleoSpin RNA II kit (Macherey-Nagel).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | cRNA was synthesized using an IVT labeling kit (Affymetrix), with the cRNA product purified using a GeneChip Sample Cleanup Module (Affymetrix).
| | Sample_hyb_protocol | 20 μg biotin-labeled cRNA was fragmented and hybridized to Affymetrix GeneChip MOE430 2.0 microarrays overnight in the Affy 640 hybridization oven with a speed of 60 rpm for 16 hr. Microarrays were washed and stained using the Affymetrix Fluidics Station FS400.
| | Sample_scan_protocol | GeneChip arrays were scanned using a GeneChip Scanner 3000 (Affymetrix). The probe set intensities were quantified using the GeneChip Operating Software (GCOS). All hybridized chips met standard quality control criteria.
| | Sample_data_processing | The data were analyzed using GeneSpring GX version 11 based on GCRMA analysis default settings.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | John,Lamoine,Cleveland
| | Sample_contact_email | jcleve@scripps.edu
| | Sample_contact_phone | (561) 228-3200
| | Sample_contact_fax | (561) 228-3072
| | Sample_contact_department | Cancer Biology
| | Sample_contact_institute | The Scripps Research Institute
| | Sample_contact_address | 130 Scripps Way
| | Sample_contact_city | Jupiter
| | Sample_contact_state | FL
| | Sample_contact_zip/postal_code | 33458
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM928nnn/GSM928282/suppl/GSM928282_RR3_2_3_Mouse430_2_.CEL.gz
| | Sample_series_id | GSE37791
| | Sample_series_id | GSE37792
| | Sample_data_row_count | 45037
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