Search results for the GEO ID: GSE37975  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM931161 | GPL1261 |
|
4T1.2_Primary_Rep-01
|
Primary 4T1.2 mammary tumor
|
strain: Balb/c
tissue: mammary gland tumor
tumor stage: primary
|
PRIMARY_S1
Gene expression data from primary 4T1.2 tumor epithelial cells.
Biological replicate 1.
|
| Sample_geo_accession | GSM931161
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931161/suppl/GSM931161_primary_s1.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931162 | GPL1261 |
|
4T1.2_BoneMetastases_Rep-01
|
Matched 4T1.2 spine metastases
|
strain: Balb/c
tissue: bone metastasis
tumor stage: metastasis
|
METASTASIS_S1
Gene expression data from 4T1.2 spine metastases.
Biological replicate 1.
|
| Sample_geo_accession | GSM931162
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931162/suppl/GSM931162_metastasis_s1.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931163 | GPL1261 |
|
4T1.2_Primary_Rep-02
|
Primary 4T1.2 mammary tumor
|
strain: Balb/c
tissue: mammary gland tumor
tumor stage: primary
|
PRIMARY_S2
Gene expression data from primary 4T1.2 tumor epithelial cells.
Biological replicate 2.
|
| Sample_geo_accession | GSM931163
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931163/suppl/GSM931163_primary_s2.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931164 | GPL1261 |
|
4T1.2_BoneMetastases_Rep-02
|
Matched 4T1.2 spine metastases
|
strain: Balb/c
tissue: bone metastasis
tumor stage: metastasis
|
METASTATSIS_S2
Gene expression data from 4T1.2 spine metastases.
Biological replicate 2.
|
| Sample_geo_accession | GSM931164
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931164/suppl/GSM931164_metastasis_s2.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931165 | GPL1261 |
|
4T1.2_Primary_Rep-03
|
Primary 4T1.2 mammary tumor
|
strain: Balb/c
tissue: mammary gland tumor
tumor stage: primary
|
PRIMARY_S3
Gene expression data from primary 4T1.2 tumor epithelial cells.
Biological replicate 3.
|
| Sample_geo_accession | GSM931165
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931165/suppl/GSM931165_primary_s3.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931166 | GPL1261 |
|
4T1.2_BoneMetastases_Rep-03
|
Matched 4T1.2 spine metastases
|
strain: Balb/c
tissue: bone metastasis
tumor stage: metastasis
|
METASTATSIS_S3
Gene expression data from 4T1.2 spine metastases.
Biological replicate 3.
|
| Sample_geo_accession | GSM931166
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931166/suppl/GSM931166_metastasis_s3.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931167 | GPL1261 |
|
4T1.2_Primary_Rep-04
|
Primary 4T1.2 mammary tumor
|
strain: Balb/c
tissue: mammary gland tumor
tumor stage: primary
|
PRIMARY_S4
Gene expression data from primary 4T1.2 tumor epithelial cells.
Biological replicate 4.
|
| Sample_geo_accession | GSM931167
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931167/suppl/GSM931167_primary_s4.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
| | |
|
GSM931168 | GPL1261 |
|
4T1.2_BoneMetastases_Rep-04
|
Matched 4T1.2 spine metastases
|
strain: Balb/c
tissue: bone metastasis
tumor stage: metastasis
|
METASTATSIS_S4
Gene expression data from 4T1.2 spine metastases.
Biological replicate 4.
|
| Sample_geo_accession | GSM931168
| | Sample_status | Public on Jul 18 2012
| | Sample_submission_date | May 14 2012
| | Sample_last_update_date | Jul 18 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_growth_protocol_ch1 | Tumor epithelial cells were isolated from 4T1.2 primary tumors growing in the mammary gland and matched spine metastases.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted using Qiagen RNeasy mini columns according to the manufacturer's instructions. The protocol includes an on-column DNase digestion step. RNA was quantified using a NanoDrop-1000 spectrophotometer, and quality was monitored with the Agilent 2100 Bioanalyzer.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was labeled using the Affymetrix two cycle target labeling kit with the first in vitro transcription performed using a Megascript T7 Kit (Ambion).
| | Sample_hyb_protocol | cRNA was hybridized according to the manufacturer's instructions for 16 hours at 45°C.
| | Sample_scan_protocol | Arrays were scanned on an Affymetrix GeneChip Scanner 3000 7G according to the manufacturer's instructions.
| | Sample_data_processing | Data processing was performed using GeneSpring 7 applying RMA file preprocessing.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Sam,,Forster
| | Sample_contact_laboratory | Centre for Innate Immunity and Infectious Diseases
| | Sample_contact_department | Monash Institute
| | Sample_contact_institute | Monash University
| | Sample_contact_address | 27 - 31 Wright Street
| | Sample_contact_city | Clayton
| | Sample_contact_state | Victoria
| | Sample_contact_zip/postal_code | 3168
| | Sample_contact_country | Australia
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931168/suppl/GSM931168_metastasis_s4.cel.gz
| | Sample_series_id | GSE37975
| | Sample_data_row_count | 45101
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