Search results for the GEO ID: GSE37995  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM931668 | GPL1261 |
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DEC_zDCKO_1
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spleen cDCs, zDC KO, DEC-205+
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strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DEC205+
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ZKO_DEC_1
Mice were treated with Flt3L in vivo to expand DCs.
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| Sample_geo_accession | GSM931668
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931668/suppl/GSM931668_ZKO_DEC_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931668/suppl/GSM931668_ZKO_DEC_1.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
|
GSM931669 | GPL1261 |
|
DEC_zDCKO_2
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spleen cDCs, zDC KO, DEC-205+
|
strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DEC205+
|
ZKO_DEC_2
Mice were treated with Flt3L in vivo to expand DCs.
|
| Sample_geo_accession | GSM931669
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931669/suppl/GSM931669_ZKO_DEC_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931669/suppl/GSM931669_ZKO_DEC_2.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
|
GSM931670 | GPL1261 |
|
DEC_zDCKO_3
|
spleen cDCs, zDC KO, DEC-205+
|
strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DEC205+
|
ZKO_DEC_3
Mice were treated with Flt3L in vivo to expand DCs.
|
| Sample_geo_accession | GSM931670
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931670/suppl/GSM931670_ZKO_DEC_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931670/suppl/GSM931670_ZKO_DEC_3.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
|
GSM931671 | GPL1261 |
|
DCIR2_zDCKO_1
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spleen cDCs, zDC KO, DCIR2+
|
strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DCIR2+
|
ZKO_DCIR2_1
Mice were treated with Flt3L in vivo to expand DCs.
|
| Sample_geo_accession | GSM931671
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931671/suppl/GSM931671_ZKO_DCIR2_1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931671/suppl/GSM931671_ZKO_DCIR2_1.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
|
GSM931672 | GPL1261 |
|
DCIR2_zDCKO_2
|
spleen cDCs, zDC KO, DCIR2+
|
strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DCIR2+
|
ZKO_DCIR2_2
Mice were treated with Flt3L in vivo to expand DCs.
|
| Sample_geo_accession | GSM931672
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931672/suppl/GSM931672_ZKO_DCIR2_2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931672/suppl/GSM931672_ZKO_DCIR2_2.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
|
GSM931673 | GPL1261 |
|
DCIR2_zDCKO_3
|
spleen cDCs, zDC KO, DCIR2+
|
strain/background: C57BL/6
genotype: zDC knockout
gender: male
age: 6-8 weeks
tissue: spleen
cell type: classical dendritic cells (cDCs)
cell population: CD19-CD3-NK1.1-B220-CD11chiMHCII+DCIR2+
|
ZKO_DCIR2_3
Mice were treated with Flt3L in vivo to expand DCs.
|
| Sample_geo_accession | GSM931673
| | Sample_status | Public on Jul 16 2012
| | Sample_submission_date | May 15 2012
| | Sample_last_update_date | Jul 16 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Qiagen Miniprep extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip MOE-430 2.0 Genome Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Affymetrix GeneChip Scanner.
| | Sample_data_processing | The data were analyzed with GeneSpring using default RMA normalization. The normalized values are log2 scaled, where the median is set as zero.
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,M,Meredith
| | Sample_contact_email | mmeredith@rockefeller.edu
| | Sample_contact_institute | The Rockefeller University
| | Sample_contact_address | 1230 York Ave
| | Sample_contact_city | New York
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 10065
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931673/suppl/GSM931673_ZKO_DCIR2_3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM931nnn/GSM931673/suppl/GSM931673_ZKO_DCIR2_3.mas5.CHP.gz
| | Sample_series_id | GSE37995
| | Sample_data_row_count | 39385
| | |
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