Search results for the GEO ID: GSE38190  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM724093 | GPL570 |
|
Human Conjunctiva Donor 1
|
Conjunctiva
|
tissue: Conjunctiva
|
|
| Sample_geo_accession | GSM724093
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | Jun 09 2011
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724093/suppl/GSM724093.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM724094 | GPL570 |
|
Human Conjunctiva Donor 2
|
Conjunctiva
|
tissue: Conjunctiva
|
|
| Sample_geo_accession | GSM724094
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724094/suppl/GSM724094.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM724095 | GPL570 |
|
Human Conjunctiva Donor 15 OS (Left Eye)
|
Conjunctiva
|
tissue: Conjunctiva
|
|
| Sample_geo_accession | GSM724095
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724095/suppl/GSM724095.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM724096 | GPL570 |
|
Human Cornea Donor 1
|
Cornea
|
tissue: Cornea
|
|
| Sample_geo_accession | GSM724096
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724096/suppl/GSM724096.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM724097 | GPL570 |
|
Human Cornea Donor 2
|
Cornea
|
tissue: Cornea
|
|
| Sample_geo_accession | GSM724097
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724097/suppl/GSM724097.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM724098 | GPL570 |
|
Human Cornea Donor 15 OS (Left Eye)
|
Cornea
|
tissue: Cornea
|
|
| Sample_geo_accession | GSM724098
| | Sample_status | Public on Jun 09 2011
| | Sample_submission_date | May 13 2011
| | Sample_last_update_date | May 24 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using RMAExpress software.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM724nnn/GSM724098/suppl/GSM724098.CEL.gz
| | Sample_series_id | GSE29402
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM932369 | GPL570 |
|
Human Conjunctiva Donor 15 OD (Right Eye)
|
Conjunctiva
|
tissue: Conjunctiva
|
|
| Sample_geo_accession | GSM932369
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | May 16 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932369/suppl/GSM932369_3_151851_151840.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932369/suppl/GSM932369_CJRD15_151851_151840.CEL.gz
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM932370 | GPL570 |
|
Human Limbus Donor 1
|
limbus
|
tissue: limbus
|
|
| Sample_geo_accession | GSM932370
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | May 16 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932370/suppl/GSM932370_151854_151843.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932370/suppl/GSM932370_LD1_151854_151843.CEL.gz
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM932371 | GPL570 |
|
Human Limbus Donor 2
|
limbus
|
tissue: limbus
|
|
| Sample_geo_accession | GSM932371
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | May 16 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932371/suppl/GSM932371_151847_151836.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932371/suppl/GSM932371_LD2_151847_151836.CEL.gz
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM932372 | GPL570 |
|
Human Limbus Donor 15 OS (Left Eye)
|
limbus
|
tissue: limbus
|
|
| Sample_geo_accession | GSM932372
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | May 16 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932372/suppl/GSM932372_151850_151839.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932372/suppl/GSM932372_LLD15_151850_151839.CEL.gz
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
| | |
|
GSM932373 | GPL570 |
|
Human Limbus Donor 15 OD (Right Eye)
|
limbus
|
tissue: limbus
|
|
| Sample_geo_accession | GSM932373
| | Sample_status | Public on Jan 01 2013
| | Sample_submission_date | May 16 2012
| | Sample_last_update_date | Jan 01 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Each sample was resuspended in a Qiagen lysis buffer provided in w/ β-mercaptoethanol (1:100). In between homogenizations, the blade was rinsed subsequently twice in filtered ddI water, 70% ethanol, and twice again in fresh Millipore ddI water. All samples are kept on dry ice before homogenization. Total RNA was isolated using the Qiagen’s RNA easy mini columns.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Affymetrix Gene Expression Protocol for Biotin Labeling
| | Sample_hyb_protocol | Affymetrix GeneChip Hybridization Protocol
| | Sample_scan_protocol | Affymetrix GeneChip 3000 Scanner Protocol
| | Sample_data_processing | All Affymetrix data were normalized with Robust Multichip Average (RMA) algorithm using Affymetrix Expression Console.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Martin,,Nakatsu
| | Sample_contact_institute | Jules Stein Eye Institute
| | Sample_contact_address | 200 Stein Plaza
| | Sample_contact_city | Los Angeles
| | Sample_contact_state | CA
| | Sample_contact_zip/postal_code | 90095
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932373/suppl/GSM932373_151852_151841.rma.chp.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM932nnn/GSM932373/suppl/GSM932373_LRD15_151852_151841.CEL.gz
| | Sample_series_id | GSE38190
| | Sample_data_row_count | 54675
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