Search results for the GEO ID: GSE38516  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM944450 | GPL96 |
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HT-29_IFN-γ_24h_rep1
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HT-29 cells treated with IFN-γ for 24 hr
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cell line: HT-29
cell type: colon adenocarcinoma
treated with: 200 U ml-1 IFN-γ for 24 hr
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HT-29_IFN-γ_24h_rep1
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| Sample_geo_accession | GSM944450
| | Sample_status | Public on Aug 06 2013
| | Sample_submission_date | Jun 05 2012
| | Sample_last_update_date | Aug 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HT-29 cells were treated with 200 U ml-1 IFN-γ (Roche) for 24 hr.
| | Sample_growth_protocol_ch1 | HT-29 cells were plated at 50,000 cells/cm2 for 24 hr in McCoy's 5A medium with 10% FBS and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using the T7-based BioArray HighYield RNA Transcript Labeling Kit (Enzo).
| | Sample_hyb_protocol | Slides were hybridized and washed according to fluidics protocol EukGE-WS2v4.
| | Sample_scan_protocol | Slides were scanned on an HP laser scanner.
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (Affymetrix) using Microarray Suite version 5.0 (MAS 5.0) algorithm with default settings.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Byong,Ha,Kang
| | Sample_contact_email | bhk3j@virginia.edu
| | Sample_contact_laboratory | Janes Lab
| | Sample_contact_department | Department of Biomedical Engineering
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 415 Lane Road, MR5-Rm. 2225
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944450/suppl/GSM944450_HT-29_IFNg_24h_rep1.CEL.gz
| | Sample_series_id | GSE38516
| | Sample_data_row_count | 22283
| | |
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GSM944451 | GPL96 |
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HT-29_IFN-γ_24h_rep2
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HT-29 cells treated with IFN-γ for 24 hr
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cell line: HT-29
cell type: colon adenocarcinoma
treated with: 200 U ml-1 IFN-γ for 24 hr
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HT-29_IFN-γ_24h_rep2
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| Sample_geo_accession | GSM944451
| | Sample_status | Public on Aug 06 2013
| | Sample_submission_date | Jun 05 2012
| | Sample_last_update_date | Aug 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HT-29 cells were treated with 200 U ml-1 IFN-γ (Roche) for 24 hr.
| | Sample_growth_protocol_ch1 | HT-29 cells were plated at 50,000 cells/cm2 for 24 hr in McCoy's 5A medium with 10% FBS and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using the T7-based BioArray HighYield RNA Transcript Labeling Kit (Enzo).
| | Sample_hyb_protocol | Slides were hybridized and washed according to fluidics protocol EukGE-WS2v4.
| | Sample_scan_protocol | Slides were scanned on an HP laser scanner.
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (Affymetrix) using Microarray Suite version 5.0 (MAS 5.0) algorithm with default settings.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Byong,Ha,Kang
| | Sample_contact_email | bhk3j@virginia.edu
| | Sample_contact_laboratory | Janes Lab
| | Sample_contact_department | Department of Biomedical Engineering
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 415 Lane Road, MR5-Rm. 2225
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944451/suppl/GSM944451_HT-29_IFNg_24h_rep2.CEL.gz
| | Sample_series_id | GSE38516
| | Sample_data_row_count | 22283
| | |
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GSM944452 | GPL96 |
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HT-29_IFN-γ_24h_rep3
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HT-29 cells treated with IFN-γ for 24 hr
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cell line: HT-29
cell type: colon adenocarcinoma
treated with: 200 U ml-1 IFN-γ for 24 hr
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HT-29_IFN-γ_24h_rep3
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| Sample_geo_accession | GSM944452
| | Sample_status | Public on Aug 06 2013
| | Sample_submission_date | Jun 05 2012
| | Sample_last_update_date | Aug 06 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | HT-29 cells were treated with 200 U ml-1 IFN-γ (Roche) for 24 hr.
| | Sample_growth_protocol_ch1 | HT-29 cells were plated at 50,000 cells/cm2 for 24 hr in McCoy's 5A medium with 10% FBS and 5% CO2.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was isolated with the RNeasy Mini Kit (Qiagen) according to the manufacturer's protocols.
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotin-labeled cRNA was prepared using the T7-based BioArray HighYield RNA Transcript Labeling Kit (Enzo).
| | Sample_hyb_protocol | Slides were hybridized and washed according to fluidics protocol EukGE-WS2v4.
| | Sample_scan_protocol | Slides were scanned on an HP laser scanner.
| | Sample_data_processing | The data were analyzed with Expression Console version 1.1 (Affymetrix) using Microarray Suite version 5.0 (MAS 5.0) algorithm with default settings.
| | Sample_platform_id | GPL96
| | Sample_contact_name | Byong,Ha,Kang
| | Sample_contact_email | bhk3j@virginia.edu
| | Sample_contact_laboratory | Janes Lab
| | Sample_contact_department | Department of Biomedical Engineering
| | Sample_contact_institute | University of Virginia
| | Sample_contact_address | 415 Lane Road, MR5-Rm. 2225
| | Sample_contact_city | Charlottesville
| | Sample_contact_state | VA
| | Sample_contact_zip/postal_code | 22908
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944452/suppl/GSM944452_HT-29_IFNg_24h_rep3.CEL.gz
| | Sample_series_id | GSE38516
| | Sample_data_row_count | 22283
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