Search results for the GEO ID: GSE38538  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM944988 | GPL1261 |
|
NSP cells 6 days after lentivirus infection CTL1
|
NSP cells, CTL lentivirus 6 days
|
age: E12.5
cell type: NSP
infection: CTL shRNA lentivirus
|
|
| Sample_geo_accession | GSM944988
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944988/suppl/GSM944988_Ballas_CTL_1.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
|
GSM944989 | GPL1261 |
|
NSP cells 6 days after lentivirus infection REST shRNA 1
|
NSP cells, REST shRNA 6 days
|
age: E12.5
cell type: NSP
infection: REST shRNA lentivirus
|
|
| Sample_geo_accession | GSM944989
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944989/suppl/GSM944989_Ballas_shRNA_1.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
|
GSM944990 | GPL1261 |
|
NSP cells 6 days after lentivirus infection CTL2
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NSP cells, CTL lentivirus 6 days
|
age: E12.5
cell type: NSP
infection: CTL shRNA lentivirus
|
|
| Sample_geo_accession | GSM944990
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944990/suppl/GSM944990_Ballas_CTL_2.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
|
GSM944991 | GPL1261 |
|
NSP cells 6 days after lentivirus infection REST shRNA 2
|
NSP cells, REST shRNA 6 days
|
age: E12.5
cell type: NSP
infection: REST shRNA lentivirus
|
|
| Sample_geo_accession | GSM944991
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944991/suppl/GSM944991_Ballas_shRNA_2.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
|
GSM944992 | GPL1261 |
|
NSP cells 6 days after lentivirus infection CTL3
|
NSP cells, CTL lentivirus 6 days
|
age: E12.5
cell type: NSP
infection: CTL shRNA lentivirus
|
|
| Sample_geo_accession | GSM944992
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944992/suppl/GSM944992_Ballas_CTL_3.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
|
GSM944993 | GPL1261 |
|
NSP cells 6 days after lentivirus infection REST shRNA 3
|
NSP cells, REST shRNA 6 days
|
age: E12.5
cell type: NSP
infection: REST shRNA lentivirus
|
|
| Sample_geo_accession | GSM944993
| | Sample_status | Public on Jun 07 2012
| | Sample_submission_date | Jun 06 2012
| | Sample_last_update_date | Jun 07 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_treatment_protocol_ch1 | Cells were infected with either CTL or REST shRNA lentivirus overnight, the lentivirus was removed and the cells regrown for 6 days with media changes every other day
| | Sample_growth_protocol_ch1 | E12.5 brains were dissected, dissociated and plated on PDL/Lam 60mm dishes and grown until confluent. Cells were dissociated and split prior to lentiviral infection
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed as per manufacturers instructions
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | The amplified cDNA was fragmented and labeled with biotin using Encore Biotin Module (NuGEN, Cat#4200-A01)
| | Sample_hyb_protocol | The labeled samples were hybridized to Affymetrix GeneCHip Mouse Genome 430 2.0 Array
| | Sample_scan_protocol | The detection and quantitation of target hybridization was performed with an Affymetrix GeneChip Scanner
| | Sample_data_processing | Data analysis was performed using Agilent Genespring GX Software
| | Sample_platform_id | GPL1261
| | Sample_contact_name | Matthew,,Covey
| | Sample_contact_email | mcovey@ms.cc.sunysb.edu
| | Sample_contact_phone | (862) 216-2321
| | Sample_contact_laboratory | Ballas
| | Sample_contact_department | Biochemistry
| | Sample_contact_institute | Stony Brook University
| | Sample_contact_address | 350 CMM Building
| | Sample_contact_city | Stony Brook
| | Sample_contact_state | New York
| | Sample_contact_zip/postal_code | 11794
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM944nnn/GSM944993/suppl/GSM944993_Ballas_shRNA_3.CEL.gz
| | Sample_series_id | GSE38538
| | Sample_data_row_count | 45101
| | |
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