Search results for the GEO ID: GSE3858  |
(Click on the check boxes provided under "Select for analysis", to initiate grouping) |
(Once the selection is made, click on "Add groups" in "Make groups for comparison", to make a group. Scroll down) |
|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM88075 | GPL339 |
|
MDER 0h replicate 1
|
mouse embryonic fibroblast transduced with a fusion protein between Myod and the activation domain of the human estrogen receptor (MDER)
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells before induction
|
| Sample_geo_accession | GSM88075
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88075/suppl/GSM88075.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88075/suppl/GSM88075.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88076 | GPL339 |
|
MDER 0h replicate 2
|
mouse embryonic fibroblast transduced with a fusion protein between Myod and the activation domain of the human estrogen receptor
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells before induction
|
| Sample_geo_accession | GSM88076
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88076/suppl/GSM88076.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88076/suppl/GSM88076.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88077 | GPL339 |
|
MDER 0h replicate 3
|
mouse embryonic fibroblast transduced with a fusion protein between Myod and the activation domain of the human estrogen receptor
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells before induction
|
| Sample_geo_accession | GSM88077
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88077/suppl/GSM88077.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88077/suppl/GSM88077.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88078 | GPL339 |
|
Myog 0h replicate 1
|
mouse embryonic fibroblast transduced with MDER and Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER + Myog cells before induction
|
| Sample_geo_accession | GSM88078
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88078/suppl/GSM88078.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88078/suppl/GSM88078.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88079 | GPL339 |
|
Myog 0h replicate 2
|
mouse embryonic fibroblast transduced with MDER and Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER + Myog cells before induction
|
| Sample_geo_accession | GSM88079
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88079/suppl/GSM88079.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88079/suppl/GSM88079.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88080 | GPL339 |
|
Myog 0h replicate 3
|
mouse embryonic fibroblast transduced with MDER and Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER + Myog cells before induction
|
| Sample_geo_accession | GSM88080
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88080/suppl/GSM88080.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88080/suppl/GSM88080.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88081 | GPL339 |
|
MDER 12h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88081
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88081/suppl/GSM88081.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88081/suppl/GSM88081.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88082 | GPL339 |
|
MDER 12h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88082
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88082/suppl/GSM88082.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88082/suppl/GSM88082.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88083 | GPL339 |
|
MDER 12h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88083
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88083/suppl/GSM88083.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88083/suppl/GSM88083.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88084 | GPL339 |
|
CON 12h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88084
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88084/suppl/GSM88084.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88084/suppl/GSM88084.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88085 | GPL339 |
|
CON 12h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88085
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88085/suppl/GSM88085.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88085/suppl/GSM88085.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88086 | GPL339 |
|
CON 12h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88086
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88086/suppl/GSM88086.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88086/suppl/GSM88086.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88087 | GPL339 |
|
MDER +Myog 12h replicate 1
|
mouse embryonic fibroblast transduced with MDER + Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88087
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88087/suppl/GSM88087.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88087/suppl/GSM88087.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88088 | GPL339 |
|
MDER +Myog 12h replicate 2
|
mouse embryonic fibroblast transduced with MDER + Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88088
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88088/suppl/GSM88088.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88088/suppl/GSM88088.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88089 | GPL339 |
|
MDER +Myog 12h replicate 3
|
mouse embryonic fibroblast transduced with MDER + Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88089
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88089/suppl/GSM88089.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88089/suppl/GSM88089.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88090 | GPL339 |
|
Myog 12h replicate 1
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88090
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88090/suppl/GSM88090.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88090/suppl/GSM88090.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88091 | GPL339 |
|
Myog 12h replicate 2
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88091
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88091/suppl/GSM88091.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88091/suppl/GSM88091.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88092 | GPL339 |
|
Myog 12h replicate 3
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 12h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88092
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88092/suppl/GSM88092.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88092/suppl/GSM88092.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88093 | GPL339 |
|
MDER 24h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88093
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88093/suppl/GSM88093.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88093/suppl/GSM88093.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88094 | GPL339 |
|
MDER 24h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88094
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88094/suppl/GSM88094.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88094/suppl/GSM88094.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88095 | GPL339 |
|
MDER 24h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88095
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88095/suppl/GSM88095.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88095/suppl/GSM88095.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88096 | GPL339 |
|
CON 24h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88096
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88096/suppl/GSM88096.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88096/suppl/GSM88096.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88097 | GPL339 |
|
CON 24h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88097
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88097/suppl/GSM88097.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88097/suppl/GSM88097.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88098 | GPL339 |
|
CON 24h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88098
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88098/suppl/GSM88098.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88098/suppl/GSM88098.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88099 | GPL339 |
|
Myog 24h replicate 1
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88099
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88099/suppl/GSM88099.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88099/suppl/GSM88099.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88100 | GPL339 |
|
Myog 24h replicate 2
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88100
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88100/suppl/GSM88100.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88100/suppl/GSM88100.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88101 | GPL339 |
|
Myog 24h replicate 3
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER+Myog cells induced for 24h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88101
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88101/suppl/GSM88101.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88101/suppl/GSM88101.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88102 | GPL339 |
|
MDER 48h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88102
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88102/suppl/GSM88102.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88102/suppl/GSM88102.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88103 | GPL339 |
|
MDER 48h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88103
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88103/suppl/GSM88103.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88103/suppl/GSM88103.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88104 | GPL339 |
|
MDER 48h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin+beta-estradiol
|
| Sample_geo_accession | GSM88104
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88104/suppl/GSM88104.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88104/suppl/GSM88104.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88105 | GPL339 |
|
CON 48h replicate 1
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88105
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88105/suppl/GSM88105.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88105/suppl/GSM88105.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88106 | GPL339 |
|
CON 48h replicate 2
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88106
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88106/suppl/GSM88106.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88106/suppl/GSM88106.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88107 | GPL339 |
|
CON 48h replicate 3
|
mouse embryonic fibroblast transduced with MDER
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88107
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88107/suppl/GSM88107.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88107/suppl/GSM88107.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88108 | GPL339 |
|
Myog 48h replicate 1
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88108
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88108/suppl/GSM88108.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88108/suppl/GSM88108.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88109 | GPL339 |
|
Myog 48h replicate 2
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88109
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88109/suppl/GSM88109.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88109/suppl/GSM88109.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
GSM88110 | GPL339 |
|
Myog 48h replicate 3
|
mouse embryonic fibroblast transduced with MDER+Myog
|
cultured primary fibroblasts isolated from Myod-/- and Myf5-/- mice
|
MDER cells induced for 48h in DMEM+1%HS+Insulin+Transferin
|
| Sample_geo_accession | GSM88110
| | Sample_status | Public on Mar 01 2006
| | Sample_submission_date | Dec 16 2005
| | Sample_last_update_date | Dec 19 2005
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Mus musculus
| | Sample_taxid_ch1 | 10090
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Total RNA was extracted from 35mm plates using an RNeasy kit (Qiagen).
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | 6 µg of total RNA was processed to produce biotinylated cRNA targets.
| | Sample_hyb_protocol | standard Affymetrix procedures
| | Sample_scan_protocol | standard Affymetrix procedures
| | Sample_data_processing | Bioconductor RMA package
| | Sample_platform_id | GPL339
| | Sample_contact_name | Yi,,Cao
| | Sample_contact_email | ycao@fhcrc.org
| | Sample_contact_phone | 206-667-5278
| | Sample_contact_laboratory | Tapscott
| | Sample_contact_department | Human Biology
| | Sample_contact_institute | Fred Hutchinson CRC
| | Sample_contact_address | 1100 Fairview Ave. N
| | Sample_contact_city | Seatttle
| | Sample_contact_state | WA
| | Sample_contact_zip/postal_code | 98109
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88110/suppl/GSM88110.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM88nnn/GSM88110/suppl/GSM88110.EXP.gz
| | Sample_series_id | GSE3858
| | Sample_data_row_count | 22690
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
|
| Select GSMs and click on "Add groups" |
Enter the group name here: |
|
|
|
