Search results for the GEO ID: GSE38595  |
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GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM945875 | GPL85 |
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WT kidney, rep1
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WT kidney
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strain background: Sprague-Dawley
genotype/variation: wild type
age: 6 days postnatal
tissue: kidney
sampling time: mid-day
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Ex-vivo kidney
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| Sample_geo_accession | GSM945875
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Jun 08 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_biomaterial_provider_ch1 | Submitter
| | Sample_treatment_protocol_ch1 | Kidneys were stored at -80C prior to RNA extraction
| | Sample_growth_protocol_ch1 | Pups were kept on a 14:10 light:dark cycle, lights on 05.00h and sampled at 12.00h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1oµg total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 µg of cRNA was hybridized for 18h at 45C on an Affymetrix rat RG_U34A GeneChip array. GeneChips were then washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500.
| | Sample_data_processing | Data were analysed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL85
| | Sample_contact_name | David,Allan ,Carter
| | Sample_contact_laboratory | Carter
| | Sample_contact_department | School of Biosciences
| | Sample_contact_institute | Cardiff University
| | Sample_contact_address | Museum Avenue
| | Sample_contact_city | Cardiff
| | Sample_contact_state | Cardiff
| | Sample_contact_zip/postal_code | CF10 3AX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | http://www.cardiff.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945875/suppl/GSM945875_S1.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945875/suppl/GSM945875_S1.CHP.gz
| | Sample_series_id | GSE38595
| | Sample_data_row_count | 8799
| | |
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GSM945881 | GPL85 |
|
WT kidney, rep2
|
WT kidney
|
strain background: Sprague-Dawley
genotype/variation: wild type
age: 6 days postnatal
tissue: kidney
sampling time: mid-day
|
Ex-vivo kidney
|
| Sample_geo_accession | GSM945881
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Jun 08 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_biomaterial_provider_ch1 | Submitter
| | Sample_treatment_protocol_ch1 | Kidneys were stored at -80C prior to RNA extraction
| | Sample_growth_protocol_ch1 | Pups were kept on a 14:10 light:dark cycle, lights on 05.00h and sampled at 12.00h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1oµg total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 µg of cRNA was hybridized for 18h at 45C on an Affymetrix rat RG_U34A GeneChip array. GeneChips were then washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500.
| | Sample_data_processing | Data were analysed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL85
| | Sample_contact_name | David,Allan ,Carter
| | Sample_contact_laboratory | Carter
| | Sample_contact_department | School of Biosciences
| | Sample_contact_institute | Cardiff University
| | Sample_contact_address | Museum Avenue
| | Sample_contact_city | Cardiff
| | Sample_contact_state | Cardiff
| | Sample_contact_zip/postal_code | CF10 3AX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | http://www.cardiff.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945881/suppl/GSM945881_S2.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945881/suppl/GSM945881_S2.CHP.gz
| | Sample_series_id | GSE38595
| | Sample_data_row_count | 8799
| | |
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GSM945896 | GPL85 |
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TG kidney, rep1
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TG kidney
|
strain background: Sprague-Dawley
genotype/variation: pEgr-1/d4EGFP transgenic rats (Slade,J.P. et al, 2002)
age: 6 days postnatal
tissue: kidney
sampling time: mid-day
|
Ex-vivo kidney
|
| Sample_geo_accession | GSM945896
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Jun 08 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_biomaterial_provider_ch1 | Submitter
| | Sample_treatment_protocol_ch1 | Kidneys were stored at -80C prior to RNA extraction
| | Sample_growth_protocol_ch1 | Pups were kept on a 14:10 light:dark cycle, lights on 05.00h and sampled at 12.00h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1oµg total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 µg of cRNA was hybridized for 18h at 45C on an Affymetrix rat RG_U34A GeneChip array. GeneChips were then washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500.
| | Sample_data_processing | Data were analysed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL85
| | Sample_contact_name | David,Allan ,Carter
| | Sample_contact_laboratory | Carter
| | Sample_contact_department | School of Biosciences
| | Sample_contact_institute | Cardiff University
| | Sample_contact_address | Museum Avenue
| | Sample_contact_city | Cardiff
| | Sample_contact_state | Cardiff
| | Sample_contact_zip/postal_code | CF10 3AX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | http://www.cardiff.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945896/suppl/GSM945896_S3.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945896/suppl/GSM945896_S3.CHP.gz
| | Sample_series_id | GSE38595
| | Sample_data_row_count | 8799
| | |
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GSM945897 | GPL85 |
|
TG kidney, rep2
|
TG kidney
|
strain background: Sprague-Dawley
genotype/variation: pEgr-1/d4EGFP transgenic rats (Slade,J.P. et al, 2002)
age: 6 days postnatal
tissue: kidney
sampling time: mid-day
|
Ex-vivo kidney
|
| Sample_geo_accession | GSM945897
| | Sample_status | Public on Oct 02 2012
| | Sample_submission_date | Jun 08 2012
| | Sample_last_update_date | Oct 02 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Rattus norvegicus
| | Sample_taxid_ch1 | 10116
| | Sample_biomaterial_provider_ch1 | Submitter
| | Sample_treatment_protocol_ch1 | Kidneys were stored at -80C prior to RNA extraction
| | Sample_growth_protocol_ch1 | Pups were kept on a 14:10 light:dark cycle, lights on 05.00h and sampled at 12.00h.
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA was performed according to the manufacturer's instructions.
| | Sample_label_ch1 | Biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 1oµg total RNA.
| | Sample_hyb_protocol | Following fragmentation, 20 µg of cRNA was hybridized for 18h at 45C on an Affymetrix rat RG_U34A GeneChip array. GeneChips were then washed and stained in the Affymetrix Fluidics Station.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 2500.
| | Sample_data_processing | Data were analysed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
| | Sample_platform_id | GPL85
| | Sample_contact_name | David,Allan ,Carter
| | Sample_contact_laboratory | Carter
| | Sample_contact_department | School of Biosciences
| | Sample_contact_institute | Cardiff University
| | Sample_contact_address | Museum Avenue
| | Sample_contact_city | Cardiff
| | Sample_contact_state | Cardiff
| | Sample_contact_zip/postal_code | CF10 3AX
| | Sample_contact_country | United Kingdom
| | Sample_contact_web_link | http://www.cardiff.ac.uk
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945897/suppl/GSM945897_S4.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM945nnn/GSM945897/suppl/GSM945897_S4.CHP.gz
| | Sample_series_id | GSE38595
| | Sample_data_row_count | 8799
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