Search results for the GEO ID: GSE38663  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM947191 | GPL570 |
|
Patient0 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947191
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947191/suppl/GSM947191_Patient0.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947192 | GPL570 |
|
Patient1 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947192
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947192/suppl/GSM947192_Patient1.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947193 | GPL570 |
|
Patient2 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947193
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947193/suppl/GSM947193_Patient2.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947194 | GPL570 |
|
Patient4 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947194
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947194/suppl/GSM947194_Patient4.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947195 | GPL570 |
|
Patient5 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947195
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947195/suppl/GSM947195_Patient5.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947196 | GPL570 |
|
Patient6 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947196
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947196/suppl/GSM947196_Patient6.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947197 | GPL570 |
|
Patient7 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947197
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947197/suppl/GSM947197_Patient7.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947198 | GPL570 |
|
Patient8 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947198
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947198/suppl/GSM947198_Patient8.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947199 | GPL570 |
|
Patient9 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947199
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947199/suppl/GSM947199_Patient9.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947200 | GPL570 |
|
Patient10 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947200
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947200/suppl/GSM947200_Patient10.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947201 | GPL570 |
|
Patient11 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947201
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947201/suppl/GSM947201_Patient11.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947202 | GPL570 |
|
Patient12 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947202
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947202/suppl/GSM947202_Patient12.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947203 | GPL570 |
|
Patient13 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947203
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947203/suppl/GSM947203_Patient13.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947204 | GPL570 |
|
Patient14 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947204
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947204/suppl/GSM947204_Patient14.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947205 | GPL570 |
|
Patient15 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947205
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947205/suppl/GSM947205_Patient15.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947206 | GPL570 |
|
Patient16 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947206
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947206/suppl/GSM947206_Patient16.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947207 | GPL570 |
|
Patient17 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947207
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947207/suppl/GSM947207_Patient17.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947208 | GPL570 |
|
Patient18 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947208
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947208/suppl/GSM947208_Patient18.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947209 | GPL570 |
|
Patient20 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947209
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947209/suppl/GSM947209_Patient20.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947210 | GPL570 |
|
Patient22 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947210
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947210/suppl/GSM947210_Patient22.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947211 | GPL570 |
|
Patient23 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947211
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947211/suppl/GSM947211_Patient23.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947212 | GPL570 |
|
Patient24 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947212
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947212/suppl/GSM947212_Patient24.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947213 | GPL570 |
|
Patient25 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947213
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947213/suppl/GSM947213_Patient25.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947214 | GPL570 |
|
Patient26 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947214
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947214/suppl/GSM947214_Patient26.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947215 | GPL570 |
|
Patient27 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947215
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947215/suppl/GSM947215_Patient27.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947216 | GPL570 |
|
Patient28 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947216
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947216/suppl/GSM947216_Patient28.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947217 | GPL570 |
|
Patient29 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947217
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947217/suppl/GSM947217_Patient29.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947218 | GPL570 |
|
Patient30 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947218
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947218/suppl/GSM947218_Patient30.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947219 | GPL570 |
|
Patient32 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947219
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947219/suppl/GSM947219_Patient32.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947220 | GPL570 |
|
Patient33 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947220
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947220/suppl/GSM947220_Patient33.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947221 | GPL570 |
|
Patient34 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947221
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947221/suppl/GSM947221_Patient34.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947222 | GPL570 |
|
Patient35 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947222
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947222/suppl/GSM947222_Patient35.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947223 | GPL570 |
|
Patient37 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947223
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947223/suppl/GSM947223_Patient37.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947224 | GPL570 |
|
Patient41 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947224
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947224/suppl/GSM947224_Patient41.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947225 | GPL570 |
|
Patient43 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947225
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947225/suppl/GSM947225_Patient43.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947226 | GPL570 |
|
Patient44 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947226
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947226/suppl/GSM947226_Patient44.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947227 | GPL570 |
|
Patient46 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947227
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947227/suppl/GSM947227_Patient46.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947228 | GPL570 |
|
Patient47 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947228
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947228/suppl/GSM947228_Patient47.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947229 | GPL570 |
|
Patient49 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947229
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947229/suppl/GSM947229_Patient49.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947230 | GPL570 |
|
Patient50 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947230
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947230/suppl/GSM947230_Patient50.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947231 | GPL570 |
|
Patient51 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947231
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947231/suppl/GSM947231_Patient51.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947232 | GPL570 |
|
Patient52 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947232
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947232/suppl/GSM947232_Patient52.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947233 | GPL570 |
|
Patient53 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947233
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947233/suppl/GSM947233_Patient53.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947234 | GPL570 |
|
Patient54 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947234
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947234/suppl/GSM947234_Patient54.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947235 | GPL570 |
|
Patient55 IFN
|
Liver tissue IFN
|
group: B
treatment: IFN
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947235
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947235/suppl/GSM947235_Patient55.B.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947236 | GPL570 |
|
Patient56 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947236
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947236/suppl/GSM947236_Patient56.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947237 | GPL570 |
|
Patient58 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947237
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947237/suppl/GSM947237_Patient58.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947238 | GPL570 |
|
Patient60 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947238
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947238/suppl/GSM947238_Patient60.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947239 | GPL570 |
|
Patient61 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947239
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947239/suppl/GSM947239_Patient61.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947240 | GPL570 |
|
Patient62 RBV
|
Liver tissue RBV
|
group: C
treatment: RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947240
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947240/suppl/GSM947240_Patient62.C.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947241 | GPL570 |
|
Patient64 IFN+RBV
|
Liver tissue IFN+RBV
|
group: D
treatment: IFN + RBV
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947241
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947241/suppl/GSM947241_Patient64.D.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
GSM947242 | GPL570 |
|
Patient65 None
|
Liver tissue None
|
group: A
treatment: None
disease state: hepatitis C
tissue: liver biopsy
|
|
| Sample_geo_accession | GSM947242
| | Sample_status | Public on Mar 08 2013
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Mar 08 2013
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_treatment_protocol_ch1 | Samples preserved in RNALater and stored in -80C
| | Sample_growth_protocol_ch1 | Patients treated with or without ribavirin for 4 weeks, and biopsied before or 6hr after an initial injection of peginterferon alfa-2a
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Trizol extraction of total RNA according to manufacturer protocol
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
| | Sample_hyb_protocol | Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
| | Sample_scan_protocol | GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
| | Sample_data_processing | Data analyzed using Partek Genomics Suite with GCRMA normalization
| | Sample_platform_id | GPL570
| | Sample_contact_name | Yaron,,Rotman
| | Sample_contact_email | rotmany@mail.nih.gov
| | Sample_contact_phone | 301-451-6553
| | Sample_contact_fax | 301-402-1491
| | Sample_contact_department | Liver Diseases Branch
| | Sample_contact_institute | NIH, NIDDK
| | Sample_contact_address | 10 Center Drive, Bldg 10, Room 9C434
| | Sample_contact_city | Bethesda
| | Sample_contact_state | MD
| | Sample_contact_zip/postal_code | 20892-1800
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947242/suppl/GSM947242_Patient65.A.CEL.gz
| | Sample_series_id | GSE38663
| | Sample_data_row_count | 54613
| | |
|
| |
| |
Make groups for comparisons |
(2 groups will be compared at a time) |
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| Select GSMs and click on "Add groups" |
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