Search results for the GEO ID: GSE38666  |
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|
GSM ID | GPL ID |
Select for analysis |
Title |
Source name |
Description |
Characteristics |
GSM947269 | GPL570 |
|
Normal Stroma_Patient ID 434
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 434
tissue: Ovarian Normal Stroma
age: 41
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947269
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947269/suppl/GSM947269_NS_434.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947269/suppl/GSM947269_NS_434.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947270 | GPL570 |
|
Normal Stroma_Patient ID 437
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 437
tissue: Ovarian Normal Stroma
age: 54
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947270
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947270/suppl/GSM947270_NS_437.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947270/suppl/GSM947270_NS_437.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947271 | GPL570 |
|
Normal Stroma_Patient ID 440
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 440
tissue: Ovarian Normal Stroma
age: 50
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947271
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947271/suppl/GSM947271_NS_440.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947271/suppl/GSM947271_NS_440.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947272 | GPL570 |
|
Normal Stroma_Patient ID 448
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 448
tissue: Ovarian Normal Stroma
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947272
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947272/suppl/GSM947272_NS_448.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947272/suppl/GSM947272_NS_448.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947273 | GPL570 |
|
Normal Stroma_Patient ID 452
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 452
tissue: Ovarian Normal Stroma
age: 51
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947273
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947273/suppl/GSM947273_NS_452.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947273/suppl/GSM947273_NS_452.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947274 | GPL570 |
|
Normal Stroma_Patient ID 463
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 463
tissue: Ovarian Normal Stroma
age: 48
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947274
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947274/suppl/GSM947274_NS_463.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947274/suppl/GSM947274_NS_463.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947275 | GPL570 |
|
Normal Stroma_Patient ID 470
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 470
tissue: Ovarian Normal Stroma
age: 44
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947275
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947275/suppl/GSM947275_NS_470.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947275/suppl/GSM947275_NS_470.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947276 | GPL570 |
|
Normal Stroma_Patient ID 475
|
LCM-derived cells from snap-frozen tissues of normal stroma
|
cell type: LCM-derived
patient id: 475
tissue: Ovarian Normal Stroma
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of normal stroma
|
| Sample_geo_accession | GSM947276
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947276/suppl/GSM947276_NS_475.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947276/suppl/GSM947276_NS_475.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947277 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 434
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 434
tissue: Ovarian Surface Epithelium
age: 41
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947277
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947277/suppl/GSM947277_OSE_434.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947277/suppl/GSM947277_OSE_434.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947278 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 437
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 437
tissue: Ovarian Surface Epithelium
age: 54
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947278
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947278/suppl/GSM947278_OSE_437.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947278/suppl/GSM947278_OSE_437.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947279 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 440
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 440
tissue: Ovarian Surface Epithelium
age: 50
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947279
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947279/suppl/GSM947279_OSE_440.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947279/suppl/GSM947279_OSE_440.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947280 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 448
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 448
tissue: Ovarian Surface Epithelium
age: 63
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947280
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947280/suppl/GSM947280_OSE_448.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947280/suppl/GSM947280_OSE_448.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947281 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 452
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 452
tissue: Ovarian Surface Epithelium
age: 51
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947281
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947281/suppl/GSM947281_OSE_452.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947281/suppl/GSM947281_OSE_452.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947282 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 541
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 541
tissue: Ovarian Surface Epithelium
age: 41
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947282
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947282/suppl/GSM947282_OSE_541.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947282/suppl/GSM947282_OSE_541.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947283 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 463
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 463
tissue: Ovarian Surface Epithelium
age: 48
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947283
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947283/suppl/GSM947283_OSE_463.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947283/suppl/GSM947283_OSE_463.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947284 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 470
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 470
tissue: Ovarian Surface Epithelium
age: 44
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947284
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947284/suppl/GSM947284_OSE_470.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947284/suppl/GSM947284_OSE_470.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947285 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 475
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 475
tissue: Ovarian Surface Epithelium
age: 63
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947285
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947285/suppl/GSM947285_OSE_475.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947285/suppl/GSM947285_OSE_475.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947286 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 552
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 552
tissue: Ovarian Surface Epithelium
age: 41
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947286
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947286/suppl/GSM947286_OSE_552.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947286/suppl/GSM947286_OSE_552.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947287 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 563
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 563
tissue: Ovarian Surface Epithelium
age: 66
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947287
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947287/suppl/GSM947287_OSE_563.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947287/suppl/GSM947287_OSE_563.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947288 | GPL570 |
|
(normal) Ovarian Surface Epithelia_Patient ID 567
|
Cell brushings from the ovarian surface epithelium
|
cell type: LCM-derived
patient id: 567
tissue: Ovarian Surface Epithelium
age: 78
|
Gene expression data of cell brushings from the Ovarian Surface Epithelium
|
| Sample_geo_accession | GSM947288
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947288/suppl/GSM947288_OSE_567.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947288/suppl/GSM947288_OSE_567.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947289 | GPL570 |
|
Cancer Stroma_Patient ID 183
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 183
tissue: Ovarian Cancer Stroma
Stage: III
grade: 2
age: 66
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947289
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947289/suppl/GSM947289_CS_183.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947289/suppl/GSM947289_CS_183.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947290 | GPL570 |
|
Cancer Stroma_Patient ID 229
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 229
tissue: Ovarian Cancer Stroma
Stage: III c
grade: 3
age: 58
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947290
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947290/suppl/GSM947290_CS_229.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947290/suppl/GSM947290_CS_229.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947291 | GPL570 |
|
Cancer Stroma_Patient ID 242
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 242
tissue: Ovarian Cancer Stroma
Stage: II b
grade: 3
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947291
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947291/suppl/GSM947291_CS_242.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947291/suppl/GSM947291_CS_242.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947292 | GPL570 |
|
Cancer Stroma_Patient ID 336
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 336
tissue: Ovarian Cancer Stroma
Stage: I c
grade: 3
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947292
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947292/suppl/GSM947292_CS_336.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947292/suppl/GSM947292_CS_336.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947293 | GPL570 |
|
Cancer Stroma_Patient ID 367
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 367
tissue: Ovarian Cancer Stroma
Stage: II
grade: 3
age: 56
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947293
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947293/suppl/GSM947293_CS_367.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947293/suppl/GSM947293_CS_367.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947294 | GPL570 |
|
Cancer Stroma_Patient ID 369
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 369
tissue: Ovarian Cancer Stroma
Stage: III c
grade: 2
age: 52
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947294
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947294/suppl/GSM947294_CS_369.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947294/suppl/GSM947294_CS_369.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947295 | GPL570 |
|
Cancer Stroma_Patient ID 413
|
LCM-derived cells from snap-frozen tissues of cancer stroma
|
cell type: LCM-derived
patient id: 413
tissue: Ovarian Cancer Stroma
Stage: III
grade: 3
age: 49
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer stroma
|
| Sample_geo_accession | GSM947295
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947295/suppl/GSM947295_CS_413.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947295/suppl/GSM947295_CS_413.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947296 | GPL570 |
|
Cancer Epithelia_Patient ID 183
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 183
tissue: Ovarian Cancer Epithelium
Stage: III
grade: 2
age: 66
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947296
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947296/suppl/GSM947296_CEPI_183.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947296/suppl/GSM947296_CEPI_183.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947297 | GPL570 |
|
Cancer Epithelia_Patient ID 229
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 229
tissue: Ovarian Cancer Epithelium
Stage: III c
grade: 3
age: 58
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947297
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947297/suppl/GSM947297_CEPI_229.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947297/suppl/GSM947297_CEPI_229.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947298 | GPL570 |
|
Cancer Epithelia_Patient ID 242
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 242
tissue: Ovarian Cancer Epithelium
Stage: II b
grade: 3
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947298
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947298/suppl/GSM947298_CEPI_242.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947298/suppl/GSM947298_CEPI_242.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947299 | GPL570 |
|
Cancer Epithelia_Patient ID 317
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 317
tissue: Ovarian Cancer Epithelium
Stage: I c
grade: 3
age: 59
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947299
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947299/suppl/GSM947299_CEPI_317.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947299/suppl/GSM947299_CEPI_317.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947300 | GPL570 |
|
Cancer Epithelia_Patient ID 336
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 336
tissue: Ovarian Cancer Epithelium
Stage: I c
grade: 3
age: 63
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947300
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947300/suppl/GSM947300_CEPI_336.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947300/suppl/GSM947300_CEPI_336.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947301 | GPL570 |
|
Cancer Epithelia_Patient ID 367
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 367
tissue: Ovarian Cancer Epithelium
Stage: II
grade: 3
age: 56
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947301
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947301/suppl/GSM947301_CEPI_367.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947301/suppl/GSM947301_CEPI_367.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947302 | GPL570 |
|
Cancer Epithelia_Patient ID 369
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 369
tissue: Ovarian Cancer Epithelium
Stage: III c
grade: 2
age: 52
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947302
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947302/suppl/GSM947302_CEPI_369.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947302/suppl/GSM947302_CEPI_369.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947303 | GPL570 |
|
Cancer Epithelia_Patient ID 413
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 413
tissue: Ovarian Cancer Epithelium
Stage: III
grade: 3
age: 49
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947303
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947303/suppl/GSM947303_CEPI_413.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947303/suppl/GSM947303_CEPI_413.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947304 | GPL570 |
|
Cancer Epithelia_Patient ID 489
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 489
tissue: Ovarian Cancer Epithelium
Stage: IIIc/IV
grade: 3
age: 48
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947304
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947304/suppl/GSM947304_CEPI_489.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947304/suppl/GSM947304_CEPI_489.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947305 | GPL570 |
|
Cancer Epithelia_Patient ID 528
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 528
tissue: Ovarian Cancer Epithelium
Stage: III c
grade: 3
age: 66
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947305
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947305/suppl/GSM947305_CEPI_528.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947305/suppl/GSM947305_CEPI_528.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947306 | GPL570 |
|
Cancer Epithelia_Patient ID 537
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 537
tissue: Ovarian Cancer Epithelium
Stage: III a
grade: 2
age: 64
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947306
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947306/suppl/GSM947306_CEPI_537.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947306/suppl/GSM947306_CEPI_537.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947307 | GPL570 |
|
Cancer Epithelia_Patient ID 542
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 542
tissue: Ovarian Cancer Epithelium
Stage: IV
grade: 3
age: 61
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947307
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947307/suppl/GSM947307_CEPI_542.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947307/suppl/GSM947307_CEPI_542.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947308 | GPL570 |
|
Cancer Epithelia_Patient ID 551
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 551
tissue: Ovarian Cancer Epithelium
Stage: IIIc/IV
grade: 3
age: 59
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947308
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947308/suppl/GSM947308_CEPI_551.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947308/suppl/GSM947308_CEPI_551.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947309 | GPL570 |
|
Cancer Epithelia_Patient ID 5883
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 5883
tissue: Ovarian Cancer Epithelium
Stage: II c
grade: 2
age: 71
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947309
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947309/suppl/GSM947309_CEPI_588.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947309/suppl/GSM947309_CEPI_588.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947310 | GPL570 |
|
Cancer Epithelia_Patient ID 606
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 606
tissue: Ovarian Cancer Epithelium
Stage: III a
grade: 3
age: 54
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947310
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947310/suppl/GSM947310_CEPI_606.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947310/suppl/GSM947310_CEPI_606.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947311 | GPL570 |
|
Cancer Epithelia_Patient ID 617
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 617
tissue: Ovarian Cancer Epithelium
Stage: III c
grade: 2
age: 64
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947311
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947311/suppl/GSM947311_CEPI_617.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947311/suppl/GSM947311_CEPI_617.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947312 | GPL570 |
|
Cancer Epithelia_Patient ID 620
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 620
tissue: Ovarian Cancer Epithelium
Stage: III/IV
grade: 3
age: 62
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947312
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947312/suppl/GSM947312_CEPI_620.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947312/suppl/GSM947312_CEPI_620.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
|
GSM947313 | GPL570 |
|
Cancer Epithelia_Patient ID 651
|
LCM-derived cells from snap-frozen tissues of cancer epithelium
|
cell type: LCM-derived
patient id: 651
tissue: Ovarian Cancer Epithelium
Stage: IIIb/c
grade: 3
age: 45
|
Gene expression data of LCM-derived cells from fresh frozen tissues of cancer epithelium
|
| Sample_geo_accession | GSM947313
| | Sample_status | Public on Jun 14 2012
| | Sample_submission_date | Jun 12 2012
| | Sample_last_update_date | Jun 14 2012
| | Sample_type | RNA
| | Sample_channel_count | 1
| | Sample_organism_ch1 | Homo sapiens
| | Sample_taxid_ch1 | 9606
| | Sample_molecule_ch1 | total RNA
| | Sample_extract_protocol_ch1 | Cells were collected from frozen sections using LCM. RNA was isolated with PicoPure RNA isolation KIT (LifeTechnologies). Concentration and Quality of RNA was measured with RNA PicoChip on Bioanalyzer
| | Sample_label_ch1 | biotin
| | Sample_label_protocol_ch1 | RNA was amplified with Ovation Pico WTA System (NuGen) and labeled with Encor Biotin Module (NuGen)
| | Sample_hyb_protocol | Chips were hybridized to platform GPL570 platform (Affymetrix Human Genome U133 Plus2.0 Array) using Affymetrix HWS KIT and FS450_0004 Protocol
| | Sample_scan_protocol | Scan on 7G Affimetrix GeneChip scanner
| | Sample_data_processing | The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis.
| | Sample_platform_id | GPL570
| | Sample_contact_name | Loukia,,Lili
| | Sample_contact_email | l.lili@gatech.edu
| | Sample_contact_phone | 404 894 9020
| | Sample_contact_fax | 404 894 0519
| | Sample_contact_laboratory | Cancer Development and Evolution
| | Sample_contact_department | Biology
| | Sample_contact_institute | Georgia Institute of Technology
| | Sample_contact_address | 315 Ferst Dr. NW
| | Sample_contact_city | Atlanta
| | Sample_contact_state | Georgia
| | Sample_contact_zip/postal_code | 30332
| | Sample_contact_country | USA
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947313/suppl/GSM947313_CEPI_651.CEL.gz
| | Sample_supplementary_file | ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM947nnn/GSM947313/suppl/GSM947313_CEPI_651.mas5.CHP.gz
| | Sample_series_id | GSE38666
| | Sample_data_row_count | 54675
| | |
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